Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01164 ATGCATAAACCTTTCTTTTTCAATTGCAATATCAAACCTACAAAGATGAAGATTTTCTCCTCAATTCAACAACCCCACCATTTTAGTTGTACAAGATTTTTCTCTCACACTACCACAAGGACTCAACTTTCTTTTCCTACAAAGGTCTTCTTTTGCCTGGCAAAATCTGGCACAAACGGGTCATTGCATTTAAATGTGGTGTCTCCTACACTATTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAGTGCGATTGCTGCTAGAACCATCCACAAGTCAGATCTTTTTGTTGATCACCTTATCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTCACAGGGAGAGAGCTTACAACTCTGGAGATCAGGGATGTGCTTTTCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTAGTAGAAAACTATCCTAATCCACCTGTTAAGGATAAATCAGCTGTGCCAATTCCTCCTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCTTTGTCCCGAGTGAGTGAGATAGACCAGAATGGTGCCATTCTTCACCCTCATATTGTATATTTGATGGAACTTGGTATGGATATTGACAAGATTAGGAGCATCACACGAAGATTCCCATCTTTTGCCTATTATAGCTTGGAAGGTAAAATTAAGCCAGTAGTCGAGTTTCTTCTTGAACTTGGAGTACCGAAAGAGCGCATTCCCTCTATAATCTCTAAAAGGCCTCAATTATGTGGAATCAGTCTATCCGAAAATCTTAAACCTACCATGAAGTTCTTTGAATCTTTGGGTATTGACAAGAGACAATGGCCAAAAGTGATTTATCGCTTTCCAGCTATGCTAACTTATAGCAGGCCTAAAGTAATGCAAAGCATAGATTTTCTCCTTGAATTGGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCAGTTCTTTGGGTGTAGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAACCTGTAACAGAATTTTTCTTGGTGAGGGGGTACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACATTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACGGGTTACCCTAAGTCTGAGCTGGTTAAGTTCCCTCAGTATTTTGGATACCGTTTTGAGGAAAGGATTAAACCTAGATTTGCAATTATGAAAAAATCTGGAGTGAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGTAACTTTGACAAGGCCTTGAAAAAGAAAATGAAGAAAAGGCTAGAAGGTTAG 1461 0.3936 MHKPFFFNCNIKPTKMKIFSSIQQPHHFSCTRFFSHTTTRTQLSFPTKVFFCLAKSGTNGSLHLNVVSPTLLAAEKEEAKAVLTLFLKKQGLSSAIAARTIHKSDLFVDHLISKLHSKHKSWYLTGRELTTLEIRDVLFPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPIPPSNPVLDSKKLKALSRVSEIDQNGAILHPHIVYLMELGMDIDKIRSITRRFPSFAYYSLEGKIKPVVEFLLELGVPKERIPSIISKRPQLCGISLSENLKPTMKFFESLGIDKRQWPKVIYRFPAMLTYSRPKVMQSIDFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFSSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLVRGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYRFEERIKPRFAIMKKSGVKLLLNQVLSLSSSNFDKALKKKMKKRLEG* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01164 486 Gene3D Transcription termination factor 3, mitochondrial 264 484 IPR038538 -
Lapu4g01164 486 SMART mt_12 359 390 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 326 357 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 291 321 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 SMART mt_12 395 426 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 PANTHER CGI-12 PROTEIN-RELATED 168 477 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 Pfam mTERF 207 385 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 Pfam mTERF 307 472 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 Pfam mTERF 157 316 IPR003690 GO:0003690|GO:0006355
Lapu4g01164 486 FunFam Transcription termination factor MTERF5 chloroplastic 262 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01164 Lapu-Chr4 28248402 28251644 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu4g01164 mTERF 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01164 K15032 - gmx:100781900 793.497