Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01161 AAAGCACAAGACCAAAAGATTAGGATTATTGAAAAGCACAAATCGACTGAGTTAACAAGGAAAACGTGCATTCATAAAAAAAAGCCTCTTAACATGAACACAGATCCAAGGAGCGGCTTCAACCGCATTTCCAGAACCTTCCACAGCCTCAAATCACCGTTCCGCCTCCCTCCGCCCAACGCTGCCGTCTCCGCCGCATCATACGCCCTCTCCCTCCGCCGTAACTCGCCGTTTCAAGACTCTGTCACCGCCATTGTAGACGCTGCCACCGGCCACAGCATCTCCTACGGAGAACTCATCCACCGTGCCGAAAACCTAGCCGCGAACCTCGCCGCAGTTCTCAAACTCTCCAAAGGAGACGCAGCGTTCGTTCTCTCCCCAAACCTTATCCAAGTTCCGATCCTCTACTTCGCGCTCCTATCCCTCGGCGTGGTCGTCTCCCCTGCGAACCCTATCTCCACGCGCTCCGAGCTCACGCGCCTCTTCCACCTCAGCAAACCCGCTATCGTCTTTACAGTGTCTTCAATCGCGGAACGCGAGTTTGGTGTCCGTACCGTTCTCCTCGACTCCCCCGAGTTCGACTCGCTCACTCAGACGAAGATTCACACTCCGAGTCCATTCGCACCCCCCGCGCGAGTGACTCAATCCGACGTGGCAGCTATTCTGTACTCCTCGGGAACCACCGGGATGGTGAAGGGCGTGATGCTCACGCACCGTAACTTAACAGCGTTAGTCGCGGGATACGACGTCGTTCGCGTGAAGAGAAAGGAGCCCGCGGTGTCCCTCTTCACGGTGCCGTTTTTCCACCTGTTCGGGTTCACGTACAGCTTGAAGGCGATGATTCTGTCGGAGACGGCGGTTATAATGGAGAGATTCAGTTTGAGGGGAATGCTGAGCGCCGTGGAGAGGTTCCGGGTGACGCATCTCGTAGTGGTGCCGTCACTGTTGGTCGCTTTGACGAAGGACAGTGTCACCGACGGGTACGATTTGAGGACGCTAGAGGGGATTGCATGCGGCTCGGCTCCACTCGGAAAGCAAGCCGCCGAGGCTTTCCAAGCCAAGTTCCCCAGTGTCGTAGTTCTCCAGGGATACGGTTTAACCGAGTCAGGGGCTGGGGTTGCCCGAACTTCTCCGGAAGATGCTAAGCGAGTGGAAACAACAGGTAAACTGCTATCCAGGGTGGAAGCCAAAATTGTGAACCCAAACACAGGGGAAGCCATGTTTCCTGGTGAACAAGGAGAACTCTGGCTCAAATCACCTACCATTATGAAAGGTTATGTTGATGATGCAGAAGCAACTTCAGCAACTCTGGTGAATGGGTGGTTAAGAACTGGAGACCTTTGTTATTTCGATAATGATGGTTTCTTGCATGTGGTAGATAGGTTAAAACAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCTGCGGAGCTAGAAAAACGGCTCCTCTCTCACCCAGAGATAAATGATGCTGCAGTTATTCCATACGGCGATGAAGAAGCCGGGCAGGTGCCCATGGCGATCGTAGTAAGACAACCCCAAAGTTCCCTTACTGAAGCAGAAGTAATTGATTTTGTCGCTAAACAGGTTGCACCATACAAAAAAATAAGGCGCGTAGCATTTGTGGATTCAATACCGAAGAATGCCTTGGGAAAGACATTGAGAAAAGACTTGAATAAACTTGCTTCCTCTAGGTTATAA 1701 0.522 KAQDQKIRIIEKHKSTELTRKTCIHKKKPLNMNTDPRSGFNRISRTFHSLKSPFRLPPPNAAVSAASYALSLRRNSPFQDSVTAIVDAATGHSISYGELIHRAENLAANLAAVLKLSKGDAAFVLSPNLIQVPILYFALLSLGVVVSPANPISTRSELTRLFHLSKPAIVFTVSSIAEREFGVRTVLLDSPEFDSLTQTKIHTPSPFAPPARVTQSDVAAILYSSGTTGMVKGVMLTHRNLTALVAGYDVVRVKRKEPAVSLFTVPFFHLFGFTYSLKAMILSETAVIMERFSLRGMLSAVERFRVTHLVVVPSLLVALTKDSVTDGYDLRTLEGIACGSAPLGKQAAEAFQAKFPSVVVLQGYGLTESGAGVARTSPEDAKRVETTGKLLSRVEAKIVNPNTGEAMFPGEQGELWLKSPTIMKGYVDDAEATSATLVNGWLRTGDLCYFDNDGFLHVVDRLKQLIKYKGYQVAPAELEKRLLSHPEINDAAVIPYGDEEAGQVPMAIVVRQPQSSLTEAEVIDFVAKQVAPYKKIRRVAFVDSIPKNALGKTLRKDLNKLASSRL* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01161 566 ProSitePatterns Putative AMP-binding domain signature. 221 232 IPR020845 -
Lapu4g01161 566 Pfam AMP-binding enzyme 82 468 IPR000873 -
Lapu4g01161 566 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Lapu4g01161 566 Gene3D - 464 565 IPR045851 -
Lapu4g01161 566 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Lapu4g01161 566 Gene3D - 58 463 IPR042099 -
Lapu4g01161 566 CDD 4CL 57 558 - -
Lapu4g01161 566 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 45 560 - -
Lapu4g01161 566 SUPERFAMILY Acetyl-CoA synthetase-like 79 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01161 Lapu-Chr4 28203022 28215264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01161 35 562 Monolignol Biosynthesis Gene Families AT5G63380 48.816 7.18e-178 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01161 K01904 - gmx:100801143 813.527