Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01160 ATGGAGAAGATGACAACTACGTTGCCACCCGTCACAGATTCTAGGAGCGGTTTCAATCCCGCTTCCAGAACCTTCCACAGCCTCAAACCACCACTTCTTCTCCCTCCTCCCAACGCCGCCATCTCCGCCGCTTCCTACGTCCTCTTCCTCCGTCGGAACTCCCACTTTCCGGATTCCTCCACCGCCGTTATCGACTCCACCTCCGGCCACCGCCTCTCCTACGCCGAACTCATTCAACGCGCTGAAACCCTAGCCGCGAACCTTTCCACTGTTCTCAAACTCTCTAAAGCCCACACCGCGCTCGTTCTATCCGCGAACATCATCCAAGTTCCGATCCTCTGCTTCGCGCTCCTCTCCCTCGGCGTGGTCATCTCCCCCGCCAACCCTCTCTCCACGAGCTCCGAGCTTACGCGTCTCTTCCACCTCAGCAAACCCGCAGTCGTCTTCGCAGTGACTTCAATCGCTGAAAAAACACGCGAGTTTCATGTCCGAACTGTCCTCCTCGACTCGCCTGAGTTCGACTCGCTCACTCGGACTAAGATTCAGCCTCTTAGTCCACCCACGTCCCCCACGCCGGTGACTCAGTCCGACGTGGCAGCGATTCTGTACTCGTCGGGCACGACGGGGAAGGTGAAGGGCGTGATGCTTACACACCGCAACCTAACCGCGATAGCCGCGGGATACGACACGGTTCGCACGAAGCGCGCGGAGCCCGCAGTGTACCTCTATACGGTGCCGTATTTCCACGTGTACGGGTTCACGTTCAGCCTGGGGGCGATGGTGCTGTCGGAGACGGTGGTTATAATGGAGAGGTTCAGCTTGAGGGGAATGCTGAGCGCCGCGGAGAGGTTCCGAGTGACGCACATTACGGTGGTGCCGGCGCTGGTGGTGGCTCTGACGAAAGACAGAGTGACAGACGGGTACTGTTTGACGTCGTTGGAAGGGATCGTGTGTGGTGGAGCACCACTGAGGAAGGAAACCGATGACGCTTTCAAAGCCAAGTTCCCCAAGGTCCTAGTCATGCAGGGTTACGGTTTAACTGAGTCTGCTGTTACGCGAACCACTCCGGAGGAGGCTGACCGCGTGGGAACAGTAGGTAGACTGAAACCAGACATAGAAGCCAAAATCATGAACCCAGAAACAGGGAAACCCATGTTTCCTGGTGAAAAAGGAGAACTCTGGATCAAAGGACCCTACGTTATGAAAGGTTATGTTGATGATGCAGAAGCAACTTCAGCAACTCTGGTGAATGGTTGGTTAAGGACTGGGGATCTTTGTTATTTCGATAATCATGGTTTCTTGTATGTTGTAGATAGGTTAAAGGAGTTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAGTTGCTATTATCTCACCCAGAGATAGTTGACGCTGCAGTTATCCCATACCCTGATAAAGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTGAGACAACCTCAAAGCTCTCTCACCGCAGCACAAGTTATTAATTTTGTTGCCAAACAGGTTACACCATACAAGAAAATAAGGCGTGTAGCATTTGTTGATTCTATACCTAAGAATGCTTCGGGAAAGATACTAAGGAAGGACCTAAGTAAAGTTGTGCTCTCTAAATTGTAA 1635 0.5291 MEKMTTTLPPVTDSRSGFNPASRTFHSLKPPLLLPPPNAAISAASYVLFLRRNSHFPDSSTAVIDSTSGHRLSYAELIQRAETLAANLSTVLKLSKAHTALVLSANIIQVPILCFALLSLGVVISPANPLSTSSELTRLFHLSKPAVVFAVTSIAEKTREFHVRTVLLDSPEFDSLTRTKIQPLSPPTSPTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIAAGYDTVRTKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSETVVIMERFSLRGMLSAAERFRVTHITVVPALVVALTKDRVTDGYCLTSLEGIVCGGAPLRKETDDAFKAKFPKVLVMQGYGLTESAVTRTTPEEADRVGTVGRLKPDIEAKIMNPETGKPMFPGEKGELWIKGPYVMKGYVDDAEATSATLVNGWLRTGDLCYFDNHGFLYVVDRLKELIKYKGYQVAPAELEELLLSHPEIVDAAVIPYPDKEAGEVPMAFVVRQPQSSLTAAQVINFVAKQVTPYKKIRRVAFVDSIPKNASGKILRKDLSKVVLSKL* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01160 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Lapu4g01160 544 SUPERFAMILY Acetyl-CoA synthetase-like 49 541 - -
Lapu4g01160 544 CDD 4CL 53 536 - -
Lapu4g01160 544 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Lapu4g01160 544 Pfam AMP-binding enzyme 52 446 IPR000873 -
Lapu4g01160 544 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Lapu4g01160 544 Gene3D - 442 542 IPR045851 -
Lapu4g01160 544 Gene3D - 36 441 IPR042099 -
Lapu4g01160 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01160 Lapu-Chr4 28176421 28184811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01160 11 541 Monolignol Biosynthesis Gene Families AT5G63380 47.645 2.27e-176 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01160 K01904 - gmx:100784234 828.935