Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01141 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCCTGGACTATTGAAGAAGATCACAAGCTCATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCTAAGCTAGCAGGATTGTTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACACTCATATCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAAAGGAGGTTAAAGCTGCTTGGTTTGGACCCTTTGACCCTGAACCCAATTGAGCAAAGTCTGGTGAAGACAAACTTAGGACAGACATACACCCAAAAAGCACTTCAAAAGGGACTGAACAAGGTGTGGAGAACAAGTCCTTGGACATGCATGCCACAGGAGAAGAGCCAAAAACAGAAGAGAAAATGGAAGAAAACAAGGTCACATGGGATGATTATACCGCTGGATTTTTGA 570 0.4175 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSYLGNRWSKIASHFPGRTDNEIKNHWNTKIKRRLKLLGLDPLTLNPIEQSLVKTNLGQTYTQKALQKGLNKVWRTSPWTCMPQEKSQKQKRKWKKTRSHGMIIPLDF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01141 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 165 - -
Lapu4g01141 189 CDD SANT 16 61 IPR001005 -
Lapu4g01141 189 Gene3D - 11 67 - -
Lapu4g01141 189 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu4g01141 189 FunFam MYB transcription factor 11 67 - -
Lapu4g01141 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu4g01141 189 SMART sant 66 114 IPR001005 -
Lapu4g01141 189 SMART sant 13 63 IPR001005 -
Lapu4g01141 189 FunFam MYB transcription factor 68 129 - -
Lapu4g01141 189 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu4g01141 189 Gene3D - 69 116 - -
Lapu4g01141 189 CDD SANT 70 110 IPR001005 -
Lapu4g01141 189 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu4g01141 189 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lapu4g01141 189 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu4g01141 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01141 Lapu-Chr4 27956450 27957671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01141 1 131 MYB Transcription Factor Family AT5G16600 76.336 2.18e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01141 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01141 K09422 - gmx:100819471 275.404