Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01137 ATGGAGGGTACTGAACCTGACATAGAAAGGCAGCCCCTGGAAGATGCAGAAAATGAATGTCCAATATCTGCCGAGGTGGTGATTGATATGGGTCAAGAGACTCAGACTCGGAACCCCAGTGATTCTTCTGTAGCAAACACTGTTGAGGTCATTGACACTGAGAATGAGTGTACAGGTCCGAATGTTTGTACTGTTGACCGTAGTCACATGGAAATTAATGATGAATGCCAGACATCAAATATTTTCCATGATGACAAATTTCATACTGATAATGTCAGTAGTGGACAGTTGTGTGAGAACCCCTGTGCTACCTCTGTTAATATATCAATGACTAGTACAGATGTGAAAAATGAGGAGGAAATATATGTGGCGCCAAAGATTGGTATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCATGTATGCTGTCCTGAAAGGTTTTAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTATCCAGAAGATACACCTGCCATAGGCAGGGCTATCGTCCAAACAAAGGTGGTACATACTTGAGGAAATTGCAGCACGAAACAAGAACTGGTTGTTTGGCGCACATGACCATTGCTCGTCAGCCAAATGGCAAGTTTCAGGTCACTCATTTTGAAACGGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGACTTTTGCTCAAGCTATTGAAGCAAACTTAACTGTATCTGGGTTAGATGAGGTACCAAAATTGGGAATGGGATTTGACTCAGAGGAGCATGCATATGAATTTTATAATACGTATGCTGGACGAGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTGGCATCTAGACGATTCACTTGCTTCAGAGAAGGTTTTCGGCATAAAGACAAGCGAGATATGAATGCAAAGAGACCTAGGAAGGATACTAGAATTGGATGTTTGGCCCAACTGGTTATTTCTCGCCAACCTGATGGTAGGTATCATGTTACGCACTTTGAAGAAAAGCATAATCATGAACTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAAAAGGGGTTAACTGCTACTCAAATTGAAAAGAACGTTGTAGATGGATCCAACGTGCTTCCTACATCAACCTCTGAAACCAATTGTAAGGCTTATCTGGATTATCATCCCATAGGCCGTGAATATAATCTACCTTTCAAATGTACAAGCAACATAAAAGAGGGAGAAATTGAAAAAATTAAGCACCACTTCCACATCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGACGATCAAATAACTAATATATTTTGGGCTGATACAAAGATGATGGTAGATTACAGTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGTTATAAATATTATAAGGACTCCCGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCTGCACTTCTTTATAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTGTAGTTTTCATGGAGGCAATGTCGGGAAGAAAGCCAAAGACAATACTTACAGATCTAGATGTTGTAACAGCTGAAGCAATCAATGCCGTACTACCCCAAACAAATCATCGAGTTTGCGTATGGCATGTGTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGCTTTTTTTGCAAATGATTTAAGAAGCTGCTTTTTTCATCACGAGGAAGAGGATTATTTTGTTAATGGATGGAATGCTCTCCTGGACAAATATAATCTGTGGGAAAATGAATGGTTGCAACAAATATTTGGAAGCAGAGATCGATGGGCCATAGCGTATGGAAGACAATTTTTTTGTGCTGACATAGAAAGCATGCTGCTGAGAGAAAATCTTAGTGGCAACCTGAAAAGGTACCTAAAGCATGACTCCGACATTCTTCCACTTCTCAAGTATCTTGTTAAGGTTGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAGCCAGCGTATGCCACCGCTGATGGGGGATATCGTTACGTTGAAGCATGCAAGAGATCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTAAATCTAGTGATAAAGCATTGCACTGAAAATGGATCGATGTATAATTATAAAGTTAGCGTATATGAACAGGCACGAGAGTATTTGGTTACATTTGATTCCTCTAGTGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTATGTGGGGATATTATGCTGCCATGCATTAAAAGTTCTTGACTATATGAACATAAGGATTGTTCCATCCCGGTACATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2439 0.3916 MEGTEPDIERQPLEDAENECPISAEVVIDMGQETQTRNPSDSSVANTVEVIDTENECTGPNVCTVDRSHMEINDECQTSNIFHDDKFHTDNVSSGQLCENPCATSVNISMTSTDVKNEEEIYVAPKIGMEFESEDNAYKCYSMYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKGGTYLRKLQHETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFVTPCTAHMLPSQKRLTFAQAIEANLTVSGLDEVPKLGMGFDSEEHAYEFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRHKDKRDMNAKRPRKDTRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAACRVHMLRSQKGLTATQIEKNVVDGSNVLPTSTSETNCKAYLDYHPIGREYNLPFKCTSNIKEGEIEKIKHHFHIKQSKNPSFFYAFQLDADDQITNIFWADTKMMVDYSDFGDVVCFDSSYKYYKDSRPFVPFLGINNHQQMTIFGAALLYNESVESLKWLFVVFMEAMSGRKPKTILTDLDVVTAEAINAVLPQTNHRVCVWHVYQDALKHLSHVSAGSAFFANDLRSCFFHHEEEDYFVNGWNALLDKYNLWENEWLQQIFGSRDRWAIAYGRQFFCADIESMLLRENLSGNLKRYLKHDSDILPLLKYLVKVVTDWHYKELEANYDMSQRMPPLMGDIVTLKHARDPYTPKIFELFQKEYEACLNLVIKHCTENGSMYNYKVSVYEQAREYLVTFDSSSETISCSCMKFEYVGILCCHALKVLDYMNIRIVPSRYILKRWTKDARV* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01137 812 ProSiteProfiles Zinc finger SWIM-type profile. 757 793 IPR007527 GO:0008270
Lapu4g01137 812 Pfam FAR1 DNA-binding domain 141 226 IPR004330 -
Lapu4g01137 812 Pfam FAR1 DNA-binding domain 273 361 IPR004330 -
Lapu4g01137 812 Pfam MULE transposase domain 477 570 IPR018289 -
Lapu4g01137 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 115 244 IPR031052 GO:0006355
Lapu4g01137 812 SMART 26again6 768 795 IPR006564 GO:0008270
Lapu4g01137 812 Pfam SWIM zinc finger 746 791 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01137 Lapu-Chr4 27917666 27924687 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu4g01137 MULE 1.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01137 K17604 - gmx:102659753 1461.43