Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01134 ATGGCAATGCAATCATCTTCTTCGTCTTCTTCCTTCCACTACAAATTCAAATATGATGTGTTCCTCAGTTTTCGAGGGAAAGATACCCGTCAAGGCTTCACCGGCAATCTCTACAAATCTCTTTGTGACACAGGAATTCGTACCTTCATCGATGACCACCATCTTCCCAGAGGGAACCAGATTACCCCGGAACTTGAGAATGCAATCCAAGAGCCCAGAATTTTCATCGTTGTCCTCTCTCAAAACTATGCATCTTCCTCCTTTTGCTTAAACGAACTTGATTACATCCTGAGGTTTATTAAGCATAAGGGTCGGTTGGTTTTGCCAGTTTTTTATGGGGTTGACCCTTCTGATGTTAGACACCACACAGGTAGTTTTGGAGAGGCATTGGCTCATCATGAAAAGAAGTTCCATTCCTATGGTAACATGGAGAAGCTGGAGACATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTACCATTTCAGACATGGGGAAGGATACGAATATGAGTTTATGGAGAGGATTGTTGAGTTGGTCTCTAGCAAGATTAACCGTGTTGCTTTACATGTGGCGGATTACCCAGTTGGATTAGAGTCACAGGTGCTACAAGTAAAGTTGCTTCTAGATGTTGGATCTGATGATGTTGTCCACATGGTGGGAATCCATGGACTTGGTGGAGTAGGTAAAACGACACTTGCTGTTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTCCTTGAAAATGTGAGAGAAACTTCAAACAAACATGGGTTACAACATCTCCAAAGCAACCTTCTTTCTGAAACAGTTGGAGAGATTAAGTTAACGAGTATCAAAAAGGGAATTTTCATAATACAACACAGGCTCCAGCAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTACAGGCACTTGCTGGAAGACCTCATTGGTTTGGTCTAGGCAGTAGAGTCATTATAACAACTCGAGACAAACAGTTGCTAAAATGTCATGGGGTTAAAAGAACATACGAAGTGAATGAATTGAATGAGGAAGATGCTCTTGAATTACTTACTTGGAAAGCTTTCAAGTTTGAAAATTTTGATCCAAGTTACAAGGATGTTTTGAATCAAGCAGTAACTTATGCCTCAGGCCTTCCATTGGCTTTGGAATATTTGGAAGAAATATAG 1206 0.4071 MAMQSSSSSSSFHYKFKYDVFLSFRGKDTRQGFTGNLYKSLCDTGIRTFIDDHHLPRGNQITPELENAIQEPRIFIVVLSQNYASSSFCLNELDYILRFIKHKGRLVLPVFYGVDPSDVRHHTGSFGEALAHHEKKFHSYGNMEKLETWKMALHQVANLSGYHFRHGEGYEYEFMERIVELVSSKINRVALHVADYPVGLESQVLQVKLLLDVGSDDVVHMVGIHGLGGVGKTTLAVAVYNSIADHFEALCFLENVRETSNKHGLQHLQSNLLSETVGEIKLTSIKKGIFIIQHRLQQKKVLLILDDVDKEEQLQALAGRPHWFGLGSRVIITTRDKQLLKCHGVKRTYEVNELNEEDALELLTWKAFKFENFDPSYKDVLNQAVTYASGLPLALEYLEEI* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01134 401 Pfam TIR domain 17 186 IPR000157 GO:0007165
Lapu4g01134 401 ProSiteProfiles TIR domain profile. 16 186 IPR000157 GO:0007165
Lapu4g01134 401 SMART till_3 17 159 IPR000157 GO:0007165
Lapu4g01134 401 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 188 - -
Lapu4g01134 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 398 IPR027417 -
Lapu4g01134 401 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 162 IPR035897 -
Lapu4g01134 401 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 398 IPR044974 GO:0006952
Lapu4g01134 401 Pfam NB-ARC domain 207 398 IPR002182 GO:0043531
Lapu4g01134 401 PRINTS Disease resistance protein signature 221 236 - -
Lapu4g01134 401 PRINTS Disease resistance protein signature 388 401 - -
Lapu4g01134 401 PRINTS Disease resistance protein signature 295 309 - -
Lapu4g01134 401 Gene3D - 186 347 IPR027417 -
Lapu4g01134 401 Gene3D - 16 185 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01134 Lapu-Chr4 27901365 27905933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01134 12 401 WRKY Transcription Factor Family AT4G12020 27.250 3.32e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01134 - - gmx:100784366 619.387