Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01129 ATGGGTTCCCTTTCATGCTTCCTTCTTCTTTTTGCTCTTTCTCTTCTCACACCCATTTTTGTTTCCTCTTCTGCAGTTCGAGACCCTGAATTGGTTGTTCAAGAGGTCCAAAGAAGCATCAATGCTTCTCGGAGAAACTTAGGTTATTTATCATGTGGAACCGGGAACCCTATCGACGACTGCTGGCGATGCAACCCTAACTGGGAGAACAACAGGCAGAGACTAGCCGACTGCGCCATCGGGTTCGGGAAGGACGCGATCGGCGGAAGAAACGGCCGAATCTACGTGGTCACAGACTCCGGCGACGACGACGCCGTAAACCCAAAGCCCGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTAATCACGCTGAAAGAAGAGCTTCTGGTGAACTCCTTCAAGACGATCGACGGCAGAGGCGCGAGTGTGCACATTGCTGGTGGAGGGTGCATCACCATACACTACGTGAGCAACGTGATCGTTCATGGGATTCACATTCACGATTGCAAGCCCACCGGGAACACCAACATCAGAGACTCGCCGGAGCACTCGGGGTTCTGGACGAAATCGGACGGCGACGGAGTGTCCATCTTTAACTCTAAGCATGTTTGGATCGATCATTGCTCGCTGTCCAATTGCCGTGATGGGCTCATCGATGCCATTCATGGATCCACAGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACACAGGACAAGGACATGCAGGTCACTATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGTAGACACGGGTATTTTCATGTGGTGAACAATGACTACACACATTGGGAAATGTATGCCATTGGAGGGAGTGCCAACCCCACCATCAACAGCCAAGGAAACAGGTTTCTTGCACCAGATATTAGGTTCAGCAAAGAGGTAACAAAGCATGAAGATGCTCCACAGAGTGAGTGGATGAGTTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTTAGTGCAAGACCTTCTTCTCTCGTTGGATCAATGACCATCACTGCTGGTGCTCTTACCTGTAGAAAGGGAAACCGTTGCTGA 1215 0.4979 MGSLSCFLLLFALSLLTPIFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWENNRQRLADCAIGFGKDAIGGRNGRIYVVTDSGDDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGVSIFNSKHVWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTITAGALTCRKGNRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01129 404 PANTHER PECTATE LYASE 18-RELATED 27 402 IPR045032 GO:0030570
Lapu4g01129 404 FunFam Pectate lyase 55 397 - -
Lapu4g01129 404 Pfam Pectate lyase 137 321 IPR002022 -
Lapu4g01129 404 Gene3D - 55 397 IPR012334 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Lapu4g01129 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Lapu4g01129 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Lapu4g01129 404 SMART amb_all 130 327 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01129 Lapu-Chr4 27836111 27838927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01129 7 404 Polysaccharide Lyase AT5G63180 75.622 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01129 K01728 - gmx:100810380 795.038