Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01119 ATGGAAATGGGTCGTGCGAGAATAACCTTGAGACATATTTCGAATGAAAGAATTCGGAAGACCACTTTGATGCGAAGAAAGAGGGGTCTAATGAAGAAAATTTCTGAATTTTCGAGCAAGTGTGGTGGTGAGCATTGTTTAATCGTGTATGATGATGGTAATGGTGACGCTGGAGCAGTGACTTTGCCCCCAAACCCTGTAGAGGTACATTCCATTATTCAAAAGTACTATGAAATTCAATTAAAGAATGGGAGACCTCACAAGACTTATGGTATTAAAGAGTTTTTTGATAATAGAAAGAACACGATTGAAGCTGAGATTTCCAAAGTGCATAAAGAGATAAGCAGAATTAAGTACCCGGCTTGGGATCCAAGTCTCGTAAACATGGAAGAGGATCAATTGAGAGCCTTCTGTGATCATGTGGATGCCAAAATTAGAGCTTGTGATCAGAAAATTAAATTTCTAAAGAACAAGCCTCAAAGTGAAGCCAATTCTTGTTTCTTGCAAACTATGAATCAGGCAAGTACTTCCTTCTCCCAACCAAACCTACCCAATTTCATGCAGAACCTCTCACAAGACCAAATCATCACAACTCCTATCCCCACCCTTAATAATGGGTGGGTGGATTTTACAAATCCAGTAAATCAGGTTGATGGAGCTACCAATCAACTGAGTGACTCTGAGTTTGAGAAATTTATGATGGAACTTTCTAATTGTGATTGCTCTTATCAAGCATGTGATGATCCTGCAGGTTGTTCCAGTCAACCTGATGAATCTGTGTTGTATAATATTTCTGCAGAATATCAGAATGTGCTGCAAGGAGGAGGAGCTTTGCACACCTTCCCACCACCATTGGATGGATTTCAAACAAATTTCTATGTCTAG 885 0.3955 MEMGRARITLRHISNERIRKTTLMRRKRGLMKKISEFSSKCGGEHCLIVYDDGNGDAGAVTLPPNPVEVHSIIQKYYEIQLKNGRPHKTYGIKEFFDNRKNTIEAEISKVHKEISRIKYPAWDPSLVNMEEDQLRAFCDHVDAKIRACDQKIKFLKNKPQSEANSCFLQTMNQASTSFSQPNLPNFMQNLSQDQIITTPIPTLNNGWVDFTNPVNQVDGATNQLSDSEFEKFMMELSNCDCSYQACDDPAGCSSQPDESVLYNISAEYQNVLQGGGALHTFPPPLDGFQTNFYV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01119 294 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 53 IPR002100 GO:0003677|GO:0046983
Lapu4g01119 294 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Lapu4g01119 294 ProSiteProfiles MADS-box domain profile. 3 54 IPR002100 GO:0003677|GO:0046983
Lapu4g01119 294 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Lapu4g01119 294 PANTHER MADS BOX PROTEIN 5 135 - -
Lapu4g01119 294 SMART madsneu2 3 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01119 Lapu-Chr4 27709882 27712301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01119 3 146 Type I MADS-box Gene Family AT5G55690 33.108 4.64e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu4g01119 SRF-TF 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01119 - - pvu:PHAVU_004G061500g 351.288