Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01118 ATGCGAATGAGTTGTAATGGTTGTCGTGTGTTGCGGAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTCTGGAATGGATCAAGAACCCAGAATCCCAAGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGTCTCATGAACCTCATCAACGCTGCCTCTCAACACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAATCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTTTGTCAAGCCGCCGTAGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCTGAAGCGGCGGCTAATGCGCGGGCCCCACCTCTGAAGGCCTACGACATTCGCCACGTGTCGAAAGATGAGAACTCAGCGAACCGGACTGAGAAGGCAAAGACTCGAATCCGGGTTAAGCGAACCGGAGGCAACCTACTCATCAAACCGAAGGCCTCGAAGGGAACCGGGTTTGTTCCGGTGGAACCGGACACGAACCAGACGACAAGCCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCGGCGATTGTGGAAGGAGAGAGCAAAGAGAGTGAAAGTGTGGTGTCGGTGGAGACTTGCAACCTATTTGGTGAGACAAAGATGAGAGACGGAAACGATGAAAGTAGTAATGAGATTGGTCTGGAGTTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAGTTGAAAAGTAGTGGTGACTCAATAGATTTAGGACTTGAGTCCTCGGTTTGA 828 0.5012 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINAASQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEAAANARAPPLKAYDIRHVSKDENSANRTEKAKTRIRVKRTGGNLLIKPKASKGTGFVPVEPDTNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKMRDGNDESSNEIGLELRLGFEPVSREHHMVPMKKRRIELKSSGDSIDLGLESSV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01118 275 PIRSF AS2 1 274 IPR017414 -
Lapu4g01118 275 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Lapu4g01118 275 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 239 - -
Lapu4g01118 275 MobiDBLite consensus disorder prediction 167 188 - -
Lapu4g01118 275 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lapu4g01118 275 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01118 Lapu-Chr4 27706266 27707671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01118 1 258 AS2 family AT3G02550 60.920 1.63e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu4g01118 LOB 7.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01118 - - gmx:100814175 428.328