Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01112 ATGGAAAGGCTCCAAGGCTTTGTTGTGAAAGGGGGCATAAAATTGCCAATTGGGTTCAGGTTTTGCCCCACGGATCAGGAGCTTCTCCTTCACTACCTCAAGAAGAAGACCTTTGCTCAGGAATTACCTGCTTCAGTCATTTCAGAGTGTGATGTGTTTCAGACTCAGCCATGGCTGCTTCCAGGTGATAGGAGGGAAAAGAGGTACTTTTTCAGCAATTGTGGAAAAGTGAACAAGAGAGTTGCTGATTCAGGTTGCTGGAAATGTGTTGGAAAAGAAAAACAAATAAGACGTTGTGAGAGCAATGAAGTGATTGGGATGAAGAAAACACTGGTTTTCTGCAAAGGGTCACATGACACAAGAACTCGCTGGATCATGCACGAATTGCGTCTTGTAACTTCATACCCATATCAGATGGCAGTAGCAGATTTTGCTGTGTATGTGATATATCAGAAAAGGAAGAAGAAGACGAAAACATCTCATCAGAGAGTAGAAGTTGGTGACGATAATATAGGGTTTGGCCCAGCTTCTTCCCCATGTTTAAGTGAAGACTGTAGTCAAACCTTATAA 570 0.4263 MERLQGFVVKGGIKLPIGFRFCPTDQELLLHYLKKKTFAQELPASVISECDVFQTQPWLLPGDRREKRYFFSNCGKVNKRVADSGCWKCVGKEKQIRRCESNEVIGMKKTLVFCKGSHDTRTRWIMHELRLVTSYPYQMAVADFAVYVIYQKRKKKTKTSHQRVEVGDDNIGFGPASSPCLSEDCSQTL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01112 189 Gene3D NAC domain 24 158 IPR036093 GO:0003677|GO:0006355
Lapu4g01112 189 ProSiteProfiles NAC domain profile. 15 152 IPR003441 GO:0003677|GO:0006355
Lapu4g01112 189 PANTHER NAC TRANSCRIPTION FACTOR 56 15 159 - -
Lapu4g01112 189 SUPERFAMILY NAC domain 9 152 IPR036093 GO:0003677|GO:0006355
Lapu4g01112 189 Pfam No apical meristem (NAM) protein 16 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01112 Lapu-Chr4 27610817 27613811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01112 7 159 NAC Transcription Factor Family AT5G13180 42.593 8.92e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g01112 NAM 8.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01112 - - vun:114181461 294.664