Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01110 ATGCAAAGGTCTTGGAATGTTTTTCACTTCATTTGCCTCCTCTTTCTTTTGCATTTGTCCATTTTTGCTCCCTTTTTCTTTTCAAGTTTTTTGGCCTTCAAAACTGAAGAATTGCAAATGGGGAAAAAAGGAAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTCCAGATTCCAAAAAGGATAAGAAAAAACAGAAAAGCCACAAGTCAAAGAAAGCAAGCAGTGGCAAGGACGGGGAAGTAGCAGCAGCAGTTGCTCTTCTACCAATAGAAGATGTTAAATTAGTTGAGGCTGAGAAGGAACAAAGCAAGCATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCACATTACACTGGAAAGACCATGGAAGAGATTGCAGCTATCAAGATTCAGACTGCATTTCGTGGATATATGGCAAGAAGAGCATTGCGTGCCTTGAGAGGTTTGGTGAGGCTGAAAACCGTAGTGCAAGGGCAATCTGTTAAACGACAAGCTACTAGTACCCTACGAAGTATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAACCAAGCTCTTCAGCGCCAACTGCAGCAGAAACATGAAAAAGAACTTGAGAAGCTGCGTGCTGCTGCTGGAGAAGAATGGGATGACAGTTTGCAGTCAAAGGAGCAAATTGAAGCCAAATTGTTGCACAAGCAAGAAGCAGCTTTAAGAAGAGAGAGAGCTTTGGCCTATTCATTCTCTCATCAGCAAACATGGAAGGGCTCTTCAAAGTCATTAAATCCCACATTTATGGATCCAAAAAATCCCCAATGGGGGTGGAGTTGGCTAGAGAGGTGGATGGCTACTCGGCCATGGGATGGCCACAGCAGTGTGGATCACAATGATCATGCATCAGTGAAGAGTGCAGCAAGCCAGGCCATGTCAGTAGGAGAAATCGCCAAAGGGTCGAAAAGACCTTCCCCTTTTGGCCAAAAAGCAAGAAGACCATCTCCTCACATTTCACCTTCAAAGGCACTATCTGCTAATGTCAAGGCAAGGACATCAAGCTCAAAGGGTAGTGTGTGGGGTGGAGATGAGGACTCAAGAAGCATGTTCAGCATTCAATCGGAGCGATATCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGAGAGCCTTGCAAGCTCCCCTGCCATTCCAAGTTACATGGCATCCACAAGCTCAGCCAAGGCTAGGCTCAAAATCCAAAGGCCTTCCCCTGAAAAAGGAGGTGCTGCTGTAAGGAAACGTCTTTCTTTCTCTCCTTCAGCTGCTCCAAGAAGGTATTCTGATCCTCCTAAGGTGGAAATTGCCGCAGTTAGCAATGGAAGGGGAAGGTAG 1446 0.4592 MQRSWNVFHFICLLFLLHLSIFAPFFFSSFLAFKTEELQMGKKGSWFSAVKKVFSPDSKKDKKKQKSHKSKKASSGKDGEVAAAVALLPIEDVKLVEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTMEEIAAIKIQTAFRGYMARRALRALRGLVRLKTVVQGQSVKRQATSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELEKLRAAAGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQQTWKGSSKSLNPTFMDPKNPQWGWSWLERWMATRPWDGHSSVDHNDHASVKSAASQAMSVGEIAKGSKRPSPFGQKARRPSPHISPSKALSANVKARTSSSKGSVWGGDEDSRSMFSIQSERYRRHSIAGSSVRDDESLASSPAIPSYMASTSSAKARLKIQRPSPEKGGAAVRKRLSFSPSAAPRRYSDPPKVEIAAVSNGRGR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01110 481 SMART iq_5 144 166 IPR000048 GO:0005515
Lapu4g01110 481 MobiDBLite consensus disorder prediction 403 481 - -
Lapu4g01110 481 Coils Coil 197 231 - -
Lapu4g01110 481 MobiDBLite consensus disorder prediction 319 388 - -
Lapu4g01110 481 Pfam IQ calmodulin-binding motif 148 166 IPR000048 GO:0005515
Lapu4g01110 481 ProSiteProfiles IQ motif profile. 145 173 IPR000048 GO:0005515
Lapu4g01110 481 PANTHER IQ-DOMAIN 5-RELATED 40 456 - -
Lapu4g01110 481 MobiDBLite consensus disorder prediction 362 383 - -
Lapu4g01110 481 MobiDBLite consensus disorder prediction 58 77 - -
Lapu4g01110 481 MobiDBLite consensus disorder prediction 410 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01110 Lapu-Chr4 27593726 27598979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01110 40 480 IQD Protein Family AT5G03040 49.894 2.28e-133 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01110 - - gsj:114412345 649.432