Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01102 ATGGATCCCTCTCGCCGCGCCCCACGCGCTGTGATCGACCCCGTCCCTAAGTTCCGCCAAGTCGGGTTCTTCGCCCCGCCCGAGCGCTCCCAATCGGGTCCTCCCAACTCCGCCAACTCCTCGCCCCCAATCTCCAACTCCCTCTCGCCGGTCATGATCCCGCCGCCGCGCCACCTATCGGACAACCTCCTCCTTCATGCGCCCCCCGCCGCATCTCCCCTTCGCGCAGACTCCGGCGGCGGAACCTCCTTCGACACCGCGGACTTCTTCCCCGCGCCGCTGTCGCCCGCTCTGCCGTCGTCGTCGTACTCCAGCAGGATCGTTGGCGACTTTCACAAGGGAAACGGAGGGAAGGTGGCAGCGTCGTCTTTCCCCCGCGGAGGATTCGACCTGACGGCGATGAAGGCAGCGGCGGCCGCGAGCGTTGTCGTGCCGGCGAGCGAGCTGACCACGGTTTCGGTGGTGAATGATTCACTAGGGATTCCCGAAAAAGAAAAAGGAAGCAGAGGAGGGTCAGCAGTGGAAGTGAAAGACCAACCTACTAGTTCAAAACAGAAACCAAAAACCTCCAAAGCTGAAAGACGTGCTCTTCAAGAAGCTCAAAGAGCTGCAAAGGCTGCAGCAAAAGCTGAAGGAAATAAGGCATCTGGAACTGCATCTTCAGTGAATGTCAAACCGGCTAAAGCTGCAAAGCCTGTGCAGAAAATTGATAATGCAGCTGTTGCAGCATCTGAAAAGAAGGGAGGTGAGGTTCCACCAGAAAAGGACAGAAAAAAAGATGCTCCTCAACCACGCATGCAGTATGATGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTGAAACAAACTGAAGCTAGGAACAGAGTTGAGTTGTTCAGGCATTTGCCACAATATGAACATGGGAGTCAGCTTCCAGATCTCGAGGCAAGGTTTTTCCATCTTTCTCCAGTGCACCCAGCTGTTTATAAGGTGGGTTTGCAGTATCTAACTGGAGATATATCTGGTGCCAATGCTCGGTGTATTGCAATGCTTCAAGCATTTCAGGAGGCCATCAAAGACTACAAGGTTCCACCAGAGAAGACTCTTGTGAGAGACTTAACAGCAAAAATTAGCAGTTATGTATCATTTCTTATTGAGTGTCGACCCCTGTCAATCAGCATGGGAAATGCAATTAGGTTTCTCAAAAGTCGGATAGCCAAGCTACCTTTGGCCTTGTCTGAATCAGAAGCGAAAGCTTCTCTCCAGTCAGATATTGAGCGTTTTATTAGTGAGAAGATTATACTTGCCAACAAGGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGATGGTGATGTTCTTCTAACTTATGGGTCCTCGTCAGCTGTTGAAATGATATTATTACATGCACATGAGTTGGGAAGACAGTTTCGTGTTGTGGTAGTTGACTCCCGTCCGAAGCTTAGAGGGCAACTTTTGCTTCGCAGGCTGGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTCACTCGAGTATTTCTGGGTGCTTCGTCAGTTTTGTCTAATGGAACAGTATATTCAAGAGTAGGAACTGCATGTGTTGCAATGGTAGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTACAGCTGGACTCAATATGCTCCAATGAACTTGGTGATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTCAATCACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTCTTAAATCTGATTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTACGGCATGGTTCCGCCTACAAGTGTGCCTGTAATTGTAAGAGAATACGGGAGAGAACAGGTCTGGATATAA 1938 0.4902 MDPSRRAPRAVIDPVPKFRQVGFFAPPERSQSGPPNSANSSPPISNSLSPVMIPPPRHLSDNLLLHAPPAASPLRADSGGGTSFDTADFFPAPLSPALPSSSYSSRIVGDFHKGNGGKVAASSFPRGGFDLTAMKAAAAASVVVPASELTTVSVVNDSLGIPEKEKGSRGGSAVEVKDQPTSSKQKPKTSKAERRALQEAQRAAKAAAKAEGNKASGTASSVNVKPAKAAKPVQKIDNAAVAASEKKGGEVPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEARFFHLSPVHPAVYKVGLQYLTGDISGANARCIAMLQAFQEAIKDYKVPPEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLALSESEAKASLQSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGRQFRVVVVDSRPKLRGQLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPDVISNVLGREDVNHLDGWANIENLQLLNLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01102 645 Pfam Initiation factor 2 subunit family 336 628 IPR000649 GO:0044237
Lapu4g01102 645 MobiDBLite consensus disorder prediction 248 283 - -
Lapu4g01102 645 MobiDBLite consensus disorder prediction 156 283 - -
Lapu4g01102 645 MobiDBLite consensus disorder prediction 1 91 - -
Lapu4g01102 645 MobiDBLite consensus disorder prediction 30 47 - -
Lapu4g01102 645 SUPERFAMILY NagB/RpiA/CoA transferase-like 319 638 IPR037171 -
Lapu4g01102 645 Gene3D - 431 638 IPR042529 -
Lapu4g01102 645 MobiDBLite consensus disorder prediction 181 200 - -
Lapu4g01102 645 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 39 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01102 Lapu-Chr4 27404027 27410350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01102 4 645 Eukaryotic Initiation Factors Gene Family AT5G38640 67.169 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01102 K03680 - gmx:100775998 1052.35