LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu4g01070	ATAGAGAAGAATAATTTTATGAAAGAAAGTGCAATGCCAATGAATCTCAACATTGAGGACAAGCATACAATCGAATCCAATGACTCCAAAGCTCCACCATCCCCAAAGCAACCTTTTTTCATTGGTGTTGCTGGTGGAACTGCATCTGGAAAAACAACAGTGTGTAATATGATAAATACCCAACTTCGAGATCAACGTGTTGTCCTCATTAGTCAAGACTCGTTTTATTACCCATTGAGTGATCAAATGCTGCAAAAGGTTAATGACTACAATTTTGATCATCCTGATGCCTTTGATACGAAGCTTTTGCTTTCAACAATGGAGAAATTAAAATGTGGACAACCTGTTGATATACCAAGTTATGATTTCAAAAACCATAAGAGAATTGAATCTACACGTCAGGTTCAACCTGGAGATATAATAATTTTAGAAGGGATATTAGTTCTTCATGACCCTGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTGCGTCTTTCCCGAAGGATGAAACGTCTTGCTATTGAACATGAAAGGAATGTTGAGAACGTGCTAGACCAATATTCCAGATTTGTAAAGCCTAGTTTCGAAGATTTTGTACTGCCAACAAAAAAATATGCTGATATTATTATCCCAAGTGGAGGGGATAATGATGTTGCCATTGACTTAATAGTACAGAACATACGTATGAAGCTTGGCCAACATGATTTGTGCAAAATACATCCCAATATTTTTCTTATATTTTCTACATTTCAGATAAAGGGAATGCATACTCTTATTCGTGATGTTAAGGCAACAAAGCATGACTTTGCCTTCTACTCAGATCGTCTAATAAGACTGGTTGTTGAGCATGGATTAGGTCACCTTCCTTTTTCTGAAAAGCAGGTGATAACACCAACAGGATCTGTATATTCTGGTGTTGTTTTCTGTAGTAGGTTGTGTGGAGTTTCAATAATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAAGGAATCAAGATTGGTAAAATCCTTATTCATGGACATGGCACAAATGGTCGACAGTTAATATATGAGAAGCTACCAAAAGACATTGCAAGTCGTCATGTGTTGTTACTTGATCCAGTTAAACGGGTGGGAAACTCTGCTGTGAAAGCTATCTCTCTACTTCTGAAGAAAGGTGTACCAGAATCTAATATTATATTTCTAAACTTAGTAGCAGCACCACAAGGAATAAATGCAGTGTGTGAGAGATTTCCACTGCTAAAACTTGTGACATCAGAGATTGATGCATCACTGAATGAGAATTCTCATGTGATCCCAGGCTTAGGGGAGTTTGCTGATCGTTACTTTGCCACTGATGAT	1374	0.3719	IEKNNFMKESAMPMNLNIEDKHTIESNDSKAPPSPKQPFFIGVAGGTASGKTTVCNMINTQLRDQRVVLISQDSFYYPLSDQMLQKVNDYNFDHPDAFDTKLLLSTMEKLKCGQPVDIPSYDFKNHKRIESTRQVQPGDIIILEGILVLHDPGVRNLLNMKIFVDEDSDVRLSRRMKRLAIEHERNVENVLDQYSRFVKPSFEDFVLPTKKYADIIIPSGGDNDVAIDLIVQNIRMKLGQHDLCKIHPNIFLIFSTFQIKGMHTLIRDVKATKHDFAFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVVFCSRLCGVSIIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPKDIASRHVLLLDPVKRVGNSAVKAISLLLKKGVPESNIIFLNLVAAPQGINAVCERFPLLKLVTSEIDASLNENSHVIPGLGEFADRYFATDD	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu4g01070	458	SUPERFAMILY	PRTase-like	240	456	IPR029057	-
	Lapu4g01070	458	NCBIfam	uridine kinase	39	237	IPR000764	-
	Lapu4g01070	458	Pfam	Uracil phosphoribosyltransferase	255	456	-	-
	Lapu4g01070	458	Gene3D	-	34	240	IPR027417	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	38	55	-	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	68	79	-	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	113	128	-	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	205	218	-	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	169	179	-	-
	Lapu4g01070	458	PRINTS	Uridine kinase signature	183	194	-	-
	Lapu4g01070	458	Pfam	Phosphoribulokinase / Uridine kinase family	40	226	IPR006083	GO:0005524\|GO:0016301
	Lapu4g01070	458	FunFam	Uridine kinase	241	456	-	-
	Lapu4g01070	458	CDD	UMPK	40	235	IPR000764	-
	Lapu4g01070	458	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	33	230	IPR027417	-
	Lapu4g01070	458	CDD	PRTases_typeI	319	429	IPR000836	-
	Lapu4g01070	458	Gene3D	-	241	456	IPR029057	-
	Lapu4g01070	458	PANTHER	URIDINE KINASE	26	367	-	-
	Lapu4g01070	458	FunFam	Uridine kinase	34	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu4g01070	Lapu-Chr4	26948006	26959659	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu4g01070	15	458	PRT Gene Family	AT4G26510	69.820	0.0	644

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu4g01070	K00876		-	gmx:100803453	714.531