Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01039 ATGCTTCCAACTAAAACTTCAACTCATACGTTCGGAGTTCCTTGGTTGGAACCCCAACAAAGCGACGTCGTTACGGGGACGGGCGTTCTCTTACCTTCTTGCAAAACAATGCTGGATAGTGACTGGTACGTGGATCAATCTCACCACGAATTTCTCCAAAATGACGCGTTTTTGTTGAACCCTTTGGACTCTTCTTCTTCTTCACTGCCTCAGCAGCACCTTATGGTGCCGCAGAAGCCGAGTTTCTCCTCCTTCTTCGAAGCCAACGGTAGCGGTTTTCTCGACAGTGGGTTTGATTTCGGTGCGCAGAGCTGTTTCGTAGCAGGTTTTTCGGGGAATGTTCCGAGTTTGAACGCCGAGTTTGCGCGGTGGCGGGAGACCGGGAATTTGGAGGAATTGGAGCTACCGCCTCCGCCACCTCCGGCGGCGGAGGTGGCCGAGAGGATGAAGAGGAGGAAGAGAGAGGATGAAGAAGGGTTGAATTATGAGTCTGATGAGTATGGGAAGTTGTTGGAAAATGGTTTTGATGGAAATGATAACGATGATAATGAGAATGTGAACGGTGTTGGTGGTGGAGACCAGAAGGGAAAGAAGAAGGTGATGCCGGCGAAGAATCTCATGGCTGAGAGAAGGCGGAGGAAGAAACTGAATGATAGGTTGTACATGCTTAGGTCTATTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCCATTGACTACCTGAGGGAGTTACTACAGCGGATTAATGATCTTCATAATGAACTAGAGACAAGCCCGCCTGGCGCATCCCTTCCGCCATCTGCCAGCTTTCACCCTGTGACACCCTCTGTGCCTGCCCTTTCCTGCCGGGTGAAGGAAGAACTATGTGCTACCACTCTGCCAAGTCCTAAAAATCAATCAGCAAAGGTATTTGTTTGTCACAGTGCAAAATTATATTTCTTCCCTTTAAGTTGA 969 0.4892 MLPTKTSTHTFGVPWLEPQQSDVVTGTGVLLPSCKTMLDSDWYVDQSHHEFLQNDAFLLNPLDSSSSSLPQQHLMVPQKPSFSSFFEANGSGFLDSGFDFGAQSCFVAGFSGNVPSLNAEFARWRETGNLEELELPPPPPPAAEVAERMKRRKREDEEGLNYESDEYGKLLENGFDGNDNDDNENVNGVGGGDQKGKKKVMPAKNLMAERRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLRELLQRINDLHNELETSPPGASLPPSASFHPVTPSVPALSCRVKEELCATTLPSPKNQSAKVFVCHSAKLYFFPLS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01039 322 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 83 304 - -
Lapu4g01039 322 CDD bHLH_AtAMS_like 203 274 - -
Lapu4g01039 322 FunFam BHLH transcription factor 196 264 - -
Lapu4g01039 322 MobiDBLite consensus disorder prediction 175 200 - -
Lapu4g01039 322 Gene3D - 194 263 IPR036638 GO:0046983
Lapu4g01039 322 Pfam Helix-loop-helix DNA-binding domain 207 249 IPR011598 GO:0046983
Lapu4g01039 322 SMART finulus 206 255 IPR011598 GO:0046983
Lapu4g01039 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Lapu4g01039 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01039 Lapu-Chr4 26461668 26463265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01039 159 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 69.281 2.61e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu4g01039 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01039 - - pvu:PHAVU_004G070200g 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00511 1 16632947 16637127 Lapu4g01039 4 26461668 26463265 PCT