Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01037 ATGAGTACCAATACCAACCAAAACACCACCTTCTTCCCCACCCCACATGCTCAAATAACCACTTCTAAATTTATTAATAGCCAGGATCCATCTCAACCTACAAATCAAGGCAATGCTGACATTAGGAAAAAGCACTATAGAGGAGTTAGGCAAAGGCCTTGGGGAAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCTGCTATGGCTTATGATGCTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACGTGTTGCTGTGCCATTACCACCACCAGCAACCAACAACACCGCCTCTTCAGCTTCTGAACAGCCCTCTTCCCTCACAGCACCACCACATGGTGGTGGTGGTGGTGGTCATCAAACTCTACAAACCAGTGGCAATAGTTCTCTTGTAGTGTCGCCAACATCAGAAGAAGCAGAAGGGTTTCCAGGTCTGATGGAGTATGCTCGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCACAATGAGGATCTTATCTATGGTTCATCTCAGCCACCACCAGTGCCATTTTTTCTGTCTTCTTCATCTTCTTCTGCATTGACATCTTCAACTTCTCAGGGTGATGTTGGATGCTATGGTTCTTCTGGATTTTTTGGTCAAGGAGAGAGTGGTTTTGATGAAGGGAACACGAGGGGGTCATAG 759 0.4625 MSTNTNQNTTFFPTPHAQITTSKFINSQDPSQPTNQGNADIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALKFKGNKAKLNFPERVAVPLPPPATNNTASSASEQPSSLTAPPHGGGGGGHQTLQTSGNSSLVVSPTSEEAEGFPGLMEYARLLKCRDDDDFQRVALGLYQHHHNEDLIYGSSQPPPVPFFLSSSSSSALTSSTSQGDVGCYGSSGFFGQGESGFDEGNTRGS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01037 252 MobiDBLite consensus disorder prediction 139 156 - -
Lapu4g01037 252 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 MobiDBLite consensus disorder prediction 23 43 - -
Lapu4g01037 252 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Lapu4g01037 252 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Lapu4g01037 252 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 PANTHER DNA-BINDING DOMAIN 32 149 IPR044808 GO:0003700|GO:0009873
Lapu4g01037 252 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 MobiDBLite consensus disorder prediction 23 39 - -
Lapu4g01037 252 MobiDBLite consensus disorder prediction 112 129 - -
Lapu4g01037 252 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Lapu4g01037 252 MobiDBLite consensus disorder prediction 108 159 - -
Lapu4g01037 252 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01037 Lapu-Chr4 26420075 26422384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01037 26 125 AP2-EREBP Transcription Factor Family AT5G61890 67.961 2.42e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu4g01037 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01037 - - gmx:100806383 286.96