Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01029 ATGGTGTGCGATAAACGTTCTATGTTATTATCGTTTAGAAGAATAATCCGTTATGTTCTTCAGAATGATATTGATTTGCTGAACCCTCCAGTTGAGTTGGAGAAGAGAAAGCACAAGCTTAAGCGTCTTGTTCAGTCACCAAATTCCTTTTTCATGGATGTCAAGTGCCAGGGCTGTTTCAACATAACTACTGTGTTTAGCCACTCGCAGACAGTTGTGGTATGCGGTAACTGCCAGACTGTGTTGTGCCAACCAACCGGTGGACGTGCAAGGCCGAGCGCTTTCCTCTTTAGTGAGGGGTGGCGTGGTATTCCACGAGAGAGGGTATTCTAA 333 0.4535 MVCDKRSMLLSFRRIIRYVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARPSAFLFSEGWRGIPRERVF* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01029 110 Pfam Ribosomal protein S27 47 91 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lapu4g01029 110 SUPERFAMILY Zn-binding ribosomal proteins 47 92 IPR011332 GO:0006412
Lapu4g01029 110 PANTHER 40S RIBOSOMAL PROTEIN S27 15 91 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lapu4g01029 110 Hamap 30S ribosomal protein S27e [rps27e]. 41 110 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lapu4g01029 110 Gene3D - 22 97 IPR023407 -
Lapu4g01029 110 ProSitePatterns Ribosomal protein S27e signature. 55 87 IPR000592 GO:0003735|GO:0005840|GO:0006412
Lapu4g01029 110 FunFam 40S ribosomal protein S27 18 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01029 Lapu-Chr4 26311802 26313060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01029 19 91 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.521 5.91e-49 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01029 K02978 - minc:123230388 151.754