Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01005 ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTGGATTTAAAGAAAGCTGCGATGAAAGACGTTGATTTGGAAGCGGGTATGGCTCTTCCTCCCGATGTGGAACTAACCTCTTCCATAACCCACTTGGACACTGACATGGGTATGTTCTTGGAAGAGGCTGAGAAGGTGAAAACTGAAATGGGGTCCCTCAGAGACATCCTAGGCAGCTTGCAGCAGGCCAACGAAGAGAGCAAGTCCCTGCACAAGGCTGAGGCCCTCAAGGCTCTCAGAAGCAGAATCAACGCCGACATTGTTGCAGTCCTAAAGAAGGCCAGGGCGATCCGAACCCAGCTGGAGGAGATGGACCGCGCCAACGCCGCCAACCGGAGGCTCTCCGGTCTCAAGGACGGGTCGCCGGCTATCTACCGGACCCGGATCGCGGTTACCAATGGGCTGAGGAAGAAGCTGAAGGAACTGATGATGGAGTTTCAGGGGTTGAGGCAGAGGATGATGAGTGAGTACAAGGATACTGTGGGGAGAAGGTATTTCACAGTGACTGGGGAGTACCCAGATGAGGAGGTGATTGAGAAGATCATTGCGAATGGTAATGAGGAAGAGGTTTTGGGGAAGGCCATTCAGGAACATGGGAGAGGGAAGGTTCTGGAGACTGTGGTCGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCACGTGTTGCATGCTTCACACTATGTTAAGGATGGGACAAAGAATCTACAGAGTGCAAAGCATTACCAGAAGAGTAGCAGGAAGTGGATGTGTATTGGTATCATACTGCTGCTCATTCTTATTCTCGTTATTGTCATTCCTGTTGCCACCAGTTTAAGCAGTTCTTGA 954 0.5073 MNDLMTKSFTSYVDLKKAAMKDVDLEAGMALPPDVELTSSITHLDTDMGMFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEALKALRSRINADIVAVLKKARAIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQSAKHYQKSSRKWMCIGIILLLILILVIVIPVATSLSSS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01005 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Lapu4g01005 317 FunFam Syntaxin 132 212 312 - -
Lapu4g01005 317 SMART tSNARE_6 214 281 IPR000727 -
Lapu4g01005 317 CDD SNARE_syntaxin1-like 218 279 - -
Lapu4g01005 317 SMART SynN_4 43 170 IPR006011 GO:0016020
Lapu4g01005 317 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu4g01005 317 PANTHER SYNTAXIN 65 303 IPR045242 -
Lapu4g01005 317 SUPERFAMILY t-snare proteins 46 274 IPR010989 GO:0016020|GO:0016192
Lapu4g01005 317 Coils Coil 144 164 - -
Lapu4g01005 317 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
Lapu4g01005 317 Pfam SNARE domain 256 307 IPR000727 -
Lapu4g01005 317 Gene3D - 48 176 - -
Lapu4g01005 317 Gene3D - 215 314 - -
Lapu4g01005 317 CDD SynN 48 206 IPR006011 GO:0016020
Lapu4g01005 317 Pfam Syntaxin 51 254 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01005 Lapu-Chr4 25867984 25870549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01005 1 317 SNARE and Associated Proteins AT1G08560 65.109 1.56e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01005 K08486 - gmx:100816016 553.518