Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01002 ATGGGAACCCCACAATCCAACAACTTACCACCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAGAAGGTGGCCTCTATTCCTTTGCCAGTTTCCATCATTGCTGAAGTTGATATCTACAAGTGTGATCCATGGGAGCTACCAGGTAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGACCGGAAGTACCCAAATGGAGCCAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCAACAGGCACTGATAAGAACATAGTTGCATCACTGGCAGGAGGAATGAGAGAACATTTTGGTGTTAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTTAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAAACCTGTTAGGATCAAAGACACTTCCATGAGGTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGTCCAAACACAGTCTATCTTCAATCACAGAGTCAGCACAAACAGTGCAACCGAATGAGCAAGATCAAGCAGAAGAAGAGGAGCAAATCAAAGACACCCTTTCACCAATCTCCAAGACTACAACAACTCTTGTTCCTCCTCCACAGGCCACACTCATGTCTCAAAAATCTCTGTCCTTCTCCAACCTCTTGGATGCCACAGACTTTTCCATGCTCAGCACCATCTTATCTGAGAACCACCACTCCAATTACCCAAACACTGCTGAACCCTTGTTCAATTGTGAGAATATGGATCATGAAACCCCACAAAACTACTACACCAACAACAGTAATATTAACAACAGTACCTACTTCATTCACAAGAACCCTTCAGTGGTTCCCCACATGCCCAAACACCACCTTTCAAACATGGACGAGGACATGATGTACCCTTCAAAGAAACACCATAGTTCCTCTTGCAATTTTCCAAACACCACTCTCCAAACTGAGAACCCCCAGTGGAACTTCATGTTCAAGCAGACTCTCGTGAATCAGCAGTTACTTCCTGGTCAATATCTTCAATTTCAGTGA 1065 0.4498 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKCDPWELPGKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLAGGMREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDTNKPVRIKDTSMRLDDWVLCRIYKKSKHSLSSITESAQTVQPNEQDQAEEEEQIKDTLSPISKTTTTLVPPPQATLMSQKSLSFSNLLDATDFSMLSTILSENHHSNYPNTAEPLFNCENMDHETPQNYYTNNSNINNSTYFIHKNPSVVPHMPKHHLSNMDEDMMYPSKKHHSSSCNFPNTTLQTENPQWNFMFKQTLVNQQLLPGQYLQFQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01002 354 MobiDBLite consensus disorder prediction 172 213 - -
Lapu4g01002 354 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Lapu4g01002 354 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Lapu4g01002 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 268 - -
Lapu4g01002 354 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Lapu4g01002 354 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Lapu4g01002 354 MobiDBLite consensus disorder prediction 199 213 - -
Lapu4g01002 354 FunFam NAC transcription factor 56 18 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01002 Lapu-Chr4 25780493 25783143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01002 7 243 NAC Transcription Factor Family AT3G04070 62.963 8.76e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g01002 NAM 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01002 - - gmx:100817074 554.288