Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00998 ATGATGGAAGAACCTGTTGTGGTTAACAAAGGAGATGATCAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTGCTGAATAGAGGCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACTGGTATGAGAACCAATAGAGCAACACAATCTGGGTATTGGAAGGCCACTGGGAAGGACAAAGAGATTTACAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAGACGAATTGGGTTATGCACGAATTCAGATTGGAAGGCAAATTCGCATGTTTCAACCTTCCCAAGGCTGCAAAGGAGGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCAACAACACTGATGTTAACAAAAGGGTACTCCCAATCAACCCTGGCCTTGGCCTTCTGAGAATGAACTCAATTGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTTGTGGATCCTCTCTTTGACCAAACCTCTCACAAGCACATTGACAATGATTTCAAGGGTACTACTAATAGTACTAACACACCTTCATCATCATCAGCTAAACCTCCTTCAGGTGGCTATTACCTTCCCAATTTCATCAACAACAATCACCACATGCAGATGATGATGATGATGAAGCCAGAAGAACACAGAATCCATGAGACTCCTCCCACCAACATTAACTATGCCTCCACCAGCCAAGGGAATTTCAACTCTAACAACCCAATGGGAATTAGCACAAGCAATAACCCCCTTCAAAACTCAACCTCGCCCTTCAACATGTTCCAAGATTATTATGTGCACCAAGGCAGCAAGAACAGTTTCCAACAGTGCAAGATGGAGCAATTCTCCAACACTAACCAGCCTGTGGTCAGTGTCTCTCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCGGTGGTGTCGAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCGGATTTGGATTGCCTCTGGGATGATTACTGA 1200 0.4492 MMEEPVVVNKGDDQPLDLPPGFRFHPTDEEIITCYLTEKVLNRGFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACFNLPKAAKEEWVVCKVFHKSNNTDVNKRVLPINPGLGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHKHIDNDFKGTTNSTNTPSSSSAKPPSGGYYLPNFINNNHHMQMMMMMKPEEHRIHETPPTNINYASTSQGNFNSNNPMGISTSNNPLQNSTSPFNMFQDYYVHQGSKNSFQQCKMEQFSNTNQPVVSVSQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00998 399 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Lapu4g00998 399 ProSiteProfiles NAC domain profile. 18 169 IPR003441 GO:0003677|GO:0006355
Lapu4g00998 399 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Lapu4g00998 399 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Lapu4g00998 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 301 - -
Lapu4g00998 399 MobiDBLite consensus disorder prediction 225 244 - -
Lapu4g00998 399 FunFam NAC domain-containing protein 100-like 27 173 - -
Lapu4g00998 399 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00998 Lapu-Chr4 25675973 25678364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00998 1 397 NAC Transcription Factor Family AT5G18270 48.010 9.43e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g00998 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00998 - - gmx:100813376 612.838