Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00994 ATGCAGAGGGTAACACCATACTCTAAAGCAGTTATGGGTAAGGAAAAGGTTCACATCAGTATTGTTGTCATTGGACATGTCGACTCTGGGAAGTCAACAACCACTGGTCATCTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCTTGTGGAAGTTTGAGACCACTAGGTACTACTGCACTGTCATTGATGCTCCCGGACACAGGGATTTCATTAAGAATATGATTACCGGGACATCCCAAGCTGATTGTGCTGTGCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTCGTGAACATGCTCTTCTGTCTTTCACTCTTGGTGTGAAGCAGATGATTTGTTGCTGTAACAAGATGGATGCCACTACACCCAAATACTCCAAGGCTAGGTATGATGAAATCGTGAAGGAAGTCTCTTCGTACTTGAAGAAAGTGGGATACAACCCTGACAAGATTCCTTTTGTTCCAATTTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACAAACCTCGACTGGTACAAGGGACCTACATTGCTTGAGGCGCTTGACCAGATCACTGAGCCTAAGAGGCCATCTGACAAGCCTCTCAGGCTTCCTCTTCAGGATGTCTACAAGATTGGAGGAATCGGAACTGTACCTGTGGGACGTGTTGAGACTGGTGTCATCAAGCCTGGAATGGTGGTGACTTTTGCACCAACTGGACTGACAACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTAACAGAAGCTCTCCCTGGTGACAACGTGGGTTTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCTAAGGACGATCCTGCCAAGGAGGCTGCTAACTTCACTTCCCAGGTTATCATCATGAACCACCCTGGTCAGATCGGAAATGGCTATGCCCCTGTTCTGGATTGCCACACCTCCCACATTGCTGTGAAGTTTGCTGAGCTCATGACCAAGATTGACAGGCGATCTGGCAAGGAGCTCGAGAAGGAGCCTAAGTTCTTGAAGAATGGTGATGCTGGTTTTGTGAAGATGATTCCAACCAAGCCTATGGTGGTGGAAACTTTCTCTGAGTACCCCCCTCTTGGACGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCCGTGGGAGTCATCAAGAACGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCACAGAAGAAGAAGTGA 1377 0.4713 MQRVTPYSKAVMGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQITEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAQKKK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00994 458 CDD EF1_alpha_II 241 331 - -
Lapu4g00994 458 FunFam Elongation factor 1-alpha 334 441 - -
Lapu4g00994 458 Pfam Elongation factor Tu C-terminal domain 333 440 IPR004160 -
Lapu4g00994 458 FunFam Elongation factor 1-alpha 240 327 - -
Lapu4g00994 458 NCBIfam translation elongation factor EF-1 subunit alpha 12 444 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lapu4g00994 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 260 IPR027417 -
Lapu4g00994 458 PRINTS GTP-binding elongation factor signature 159 168 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 PRINTS GTP-binding elongation factor signature 20 33 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 PRINTS GTP-binding elongation factor signature 79 87 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 PRINTS GTP-binding elongation factor signature 115 126 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 PRINTS GTP-binding elongation factor signature 99 109 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 Gene3D - 5 239 IPR027417 -
Lapu4g00994 458 Hamap Elongation factor Tu [tuf]. 13 443 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lapu4g00994 458 PANTHER TRANSLATION FACTOR 14 444 - -
Lapu4g00994 458 Pfam Elongation factor Tu GTP binding domain 18 234 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 72 87 IPR031157 -
Lapu4g00994 458 Gene3D Translation factors 240 327 - -
Lapu4g00994 458 FunFam Elongation factor 1-alpha 12 237 - -
Lapu4g00994 458 Pfam Elongation factor Tu domain 2 259 324 IPR004161 GO:0005525
Lapu4g00994 458 CDD EF1_alpha 20 238 - -
Lapu4g00994 458 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 16 241 IPR000795 GO:0003924|GO:0005525
Lapu4g00994 458 Gene3D Translation factors 334 441 - -
Lapu4g00994 458 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 337 440 IPR009001 -
Lapu4g00994 458 SUPERFAMILY Translation proteins 242 332 IPR009000 -
Lapu4g00994 458 CDD EF1_alpha_III 334 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00994 Lapu-Chr4 25590676 25593860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00994 12 451 Eukaryotic Initiation Factors Gene Family AT5G60390 95.909 0.0 882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g01849 7 34467420 34470254 Lapu4g00994 4 25590676 25593860 PCT