Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00984 ATGTACTATCAGCAGCAACAACAAGCTAGAAACATGCATTCTTTAAGGATGCACAGCCCCACCGAGAGGCATATGATGATGCAAGGAGGCAATGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAACCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTTAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCACGGGCAAACCAATACTGGCAACAATAAAATTGCATCAACCACAGAAGCAACAGGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAACGATGCGTTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGCAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAGACACTAGGACGACAAAATTTAGGTGCTGAGGGAGTTGAAGCTGCTAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCCCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAATTACAGGTTATGTGGCCTCAGCAAACTCAGCAAACTCAGCAAACACAAGAGGGCCAAGCCACCGATTGTTCAATGGGTAGTTTCTTGATCTATGGTGAGGAATCTCAGAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTACAATGGCCCTCCATTTTCAGTTTCGAAAGATTGTGTGGAAGAGCCAATGCATTTAAAGCCTGGTCTCACATTGAGTGAAGAAGTGAAGGAGAATATGATGTTTCTTTCCTCATCAAGTGATAGTAAAATAGTGAAGGGAGATTTTTTACAAGAAAGACCCTCAAGCCTCTTATCAATGAACGTAGGAGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAGGAAGGCTGGAAGGTAAGAGACAGCACTGAAACTGGGAGAATGGAAGTTAAATTGAACCATGAGAAGATTTCTCCAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCACGATGATAACGATGCTTCTTCCAACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1269 0.4161 MYYQQQQQARNMHSLRMHSPTERHMMMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIASTTEATGRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVMWPQQTQQTQQTQEGQATDCSMGSFLIYGEESQRDRETHNMSLNLIAYNGPPFSVSKDCVEEPMHLKPGLTLSEEVKENMMFLSSSSDSKIVKGDFLQERPSSLLSMNVGVLEEEKFGRTTLSKEEGWKVRDSTETGRMEVKLNHEKISPDYRLANFEVKLDLNSHDDNDASSNCQQFDLNGFSWNC* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00984 422 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Lapu4g00984 422 FunFam Myb family transcription factor 44 102 - -
Lapu4g00984 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Lapu4g00984 422 Gene3D - 44 102 - -
Lapu4g00984 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Lapu4g00984 422 Coils Coil 148 168 - -
Lapu4g00984 422 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Lapu4g00984 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 277 IPR044848 GO:0003700
Lapu4g00984 422 Pfam MYB-CC type transfactor, LHEQLE motif 146 193 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00984 Lapu-Chr4 25404813 25407995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00984 77 421 G2-like Transcription Factor Family AT3G04030 47.126 2.23e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu4g00984 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00984 - - gmx:100786282 747.658