Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00982 ATGGAGAATGATATGGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAACCCTATAAGTGATGCTGAGAACATATGCCCATTTTGCGAGACAGAGTTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCGATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGGATTGCTCCACATGGAGGTAGCAGCTCAAGGAGGGAGGAAGAAGAGGTTGAGCAACATGTGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTATTCCGTGGACTTCACGTTAGGATGGTGTCTGAATTTGAAAACCTTGAAGACAATAGGAACATGGATAGCAGCAGCATACTTGTGATTGATCCATTCAATGAAGGTGCACTGATTGTGAGAGGCCCTAACTTGAACCACACAAGTAGTCCAAATGAGAATAATGTTGTAGGCAGCTCCCTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTACAGCACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCTTTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGTTTGGAGGATGTTGAGGTAGGGAGTGAAGCAAAGGAGATGCCATGCAAGCATAAGTTCCATGATGATTGCATTGTCTCATGGCTGAAACTTCATGGTTCTTGTCCAGTTTGCAGGTTTCAAATGCCATATGAGGATCCAAATTTTGAAGCCAGTGCGGGAATTGGAAATGACAATCAAAACAGTGAGTTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCATTCAACAATTTTCTTCCTTCTCCCTGA 966 0.4462 MENDMEGVHWCNICSKMVNPISDAENICPFCETEFSEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSRREEEEVEQHVENELVLGRRRRTSSYMMHLFRGLHVRMVSEFENLEDNRNMDSSSILVIDPFNEGALIVRGPNLNHTSSPNENNVVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGSEAKEMPCKHKFHDDCIVSWLKLHGSCPVCRFQMPYEDPNFEASAGIGNDNQNSELVRAGEERPRNGRRNWFPVLQSFNNFLPSP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00982 321 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Lapu4g00982 321 Pfam Ring finger domain 225 267 IPR001841 -
Lapu4g00982 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 271 - -
Lapu4g00982 321 SMART ring_2 226 266 IPR001841 -
Lapu4g00982 321 FunFam E3 ubiquitin-protein ligase RNF181 198 273 - -
Lapu4g00982 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Lapu4g00982 321 SUPERFAMILY RING/U-box 216 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00982 Lapu-Chr4 25390754 25391719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00982 90 286 C3H Transcription Factor Family AT1G26800 31.000 2.40e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00982 - K11982 gmx:100790855 583.948