Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00979 ATGGACATGGATGTTTGCCGAAATGTATCAGTTTCTAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCACATCAGAACATGGAAGTGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCGAGTAAGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTCAAACCACAAGCACTAGCAGCAAGCCTTCAAGCACAACGCAAAGACCCCAACAAAGTTACTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCCCCTAGGACAAAACACACTCTAAGCACATGGTCTCATAATTTCAGCACTGAAGTGTTGACTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTGCCAAAGAAGAAGGATCAGCAAGAAGTGAAAGTGGGGATTGTGGTGAGGAAGGAGAAATTGGGAGAGTGTTGTGATGAGGATGAAGTTAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCCAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCAAATTCACACAAGAAAGTCATGGAGATGAGAATGAGTGTTGTATCTACAGAGAAGTAG 774 0.4574 MDMDVCRNVSVSSECQQELPTLDDLFSHQNMEVDFGMEWLSVFVEDCFSSKPSCLLAPPGVQTTSTSSKPSSTTQRPQQSYCPLQNFAVPGKARSKRKRLSAPRTKHTLSTWSHNFSTEVLTSDPPLLKQAYWLADSELIVPKKKDQQEVKVGIVVRKEKLGECCDEDEVNNSSNNNNGQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVVSTEK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00979 257 MobiDBLite consensus disorder prediction 59 80 - -
Lapu4g00979 257 FunFam GATA transcription factor 175 257 - -
Lapu4g00979 257 CDD ZnF_GATA 186 233 IPR000679 GO:0006355|GO:0043565
Lapu4g00979 257 Gene3D - 177 252 IPR013088 GO:0006355|GO:0008270
Lapu4g00979 257 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Lapu4g00979 257 SMART GATA_3 181 235 IPR000679 GO:0006355|GO:0043565
Lapu4g00979 257 ProSiteProfiles GATA-type zinc finger domain profile. 185 217 IPR000679 GO:0006355|GO:0043565
Lapu4g00979 257 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 245 - -
Lapu4g00979 257 Pfam GATA zinc finger 187 221 IPR000679 GO:0006355|GO:0043565
Lapu4g00979 257 PANTHER GATA TRANSCRIPTION FACTOR 20 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00979 Lapu-Chr4 25335560 25337780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00979 37 249 C2C2-Gata Transcription Factor Family AT4G32890 41.364 8.75e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu4g00979 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00979 - - pvu:PHAVU_004G079200g 471.855