Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00965 ATGGAAATTCAGTTCCAGGATCCAAACCAGCACTTGAGACCAAAAGGGGTGAAACTCAAAGGGAGAAACAACAAATACAAGAACAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGAAACAACACAAAAGATAAGAATGTGGCTTGGCACCTATGAGACAGCAGAGGAAGCAGCCAGGGCCTACGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCACGGATTCAGATGCTTCTCAACAACAGAAAAGGCATCAAAGAACAAGAACAAGAACAAGATGTGGAAACATGTGCCACAAGGGTCAACAACACCAACCAACAGGAGTTGAGTCTAGCTGAAGGAGTTACTACCCTACAACATGAACAAAGGTTCGAATCTTCGCTAGAAGAACTGTCTATATTTAGTGTCCAACAAGATTGTCGTCAAAAGAAGATATATGTGAGAGGTGAGAAGAAAAAAAGGGTTACCAGCACCACTAGTAGTGCTAGTACTAGTTGTAGTACTAACACAAGCAATAGTGACACATGTGTGAACTCACTTTCTACTGAGACAACAACCCAAAACACAGAACTATTTGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGGGCCTGAGTCATGTTCTCAGGAAAATCCTTCATGGGGTTCTGAGCCTTTTTGTGACCATTTTCTCTTTGGTCAAGTAATGGATATAGCAAACCTGCCAGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAAGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGAACACTGTTCAAGACTCTAACAATGAAGCTATCTGGAATCTTCCTCCCTTGTACTCATTTTTGTGTTAA 951 0.4227 MEIQFQDPNQHLRPKGVKLKGRNNKYKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQMLLNNRKGIKEQEQEQDVETCATRVNNTNQQELSLAEGVTTLQHEQRFESSLEELSIFSVQQDCRQKKIYVRGEKKKRVTSTTSSASTSCSTNTSNSDTCVNSLSTETTTQNTELFDDAYRPDLSNFMGPESCSQENPSWGSEPFCDHFLFGQVMDIANLPDIAGLELPEFERMKVERQISASLYAINGVQEYMNTVQDSNNEAIWNLPPLYSFLC* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00965 316 MobiDBLite consensus disorder prediction 176 201 - -
Lapu4g00965 316 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Lapu4g00965 316 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 MobiDBLite consensus disorder prediction 180 201 - -
Lapu4g00965 316 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Lapu4g00965 316 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lapu4g00965 316 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Lapu4g00965 316 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00965 Lapu-Chr4 25086042 25086992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00965 18 104 AP2-EREBP Transcription Factor Family AT5G19790 70.115 1.98e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu4g00965 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00965 K09286 - gmx:100792432 398.282