Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00954 ATGAGAAAGAAACAGAAAGATAGAAATGAATGGAGGAAGGTGGTGGTGGTAAAAGTGGGGTCAAGGTCGGTGAGGCCAAGGTGGTTGCAAATTGCAATGGCAAAGCATGACGTTGAGGGTGGTGCCTTCTCTGCAAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGCAGAGGAACTCACACAGTGGTCCTTCTACAGGGCCTTGATTGCTGAGTTCATTGCCACACTGCTCTTCCTTTACATCACGGTGCTCACTGTCATTGGTTACAAGAGCCAGAGTGATGTCACTGCTGGCGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACCTTTGGGCTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGCTTAGGGGCCATATGTGGAGTTGGGTTGGTTAAGGCCTTCCAAAAGGCTTACTACAACAGGTATGGTGGTGGGGCCAATGAGCTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCTGAGATCATTGGAACCTTCGTTTTGGTGTACACTGTCTTCTCTGCTACCGACCCCAAGAGGAATGCTAGAGATTCTCATGTCCCGGTTTTGGCTCCACTTCCAATTGGTTTTGCTGTGTTCATGGTTCACTTGGCAACCATTCCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTCTTGGAGCTGCTGTCATATACAACAAAAACAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACTATTTGA 954 0.4958 MRKKQKDRNEWRKVVVVKVGSRSVRPRWLQIAMAKHDVEGGAFSAKDYHDPPPAPLIDAEELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDVTAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYNRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKNKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00954 317 CDD MIP 69 299 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 NCBIfam MIP family channel protein 73 296 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 ProSitePatterns MIP family signature. 135 143 IPR022357 -
Lapu4g00954 317 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 35 311 IPR034294 -
Lapu4g00954 317 SUPERFAMILY Aquaporin-like 61 301 IPR023271 -
Lapu4g00954 317 FunFam Probable aquaporin PIP1-2 54 315 - -
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 117 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 279 299 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 154 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 239 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 203 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 PRINTS Major intrinsic protein family signature 69 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu4g00954 317 Gene3D Glycerol uptake facilitator protein. 54 317 IPR023271 -
Lapu4g00954 317 Pfam Major intrinsic protein 61 296 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00954 Lapu-Chr4 24939072 24942154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00954 31 313 Major Intrinsic Protein MIP AT2G37170 84.859 5.93e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00954 K09872 - gmx:547857 564.303