Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00951 ATGACCGGAAACTTCATCGACGACATTGATTGTGGCAGCTTCTTCGACCACATCGACGACCTCCTGGAATTCCCCGAAGAAACAGCCGCCACTGACACTACTGCTGTCGGACCAGTCGCTCCTCCGACGAACTTCTGGTCCACCGAGTCCGACTCGCTCCCCACTGCCAACACGGTGTTTTCAAGCAACTCTGTGCCGGACCTCTCGACGGAGCTCTCTGTTCCGTATGAAGACATTGTACAAATGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAAGATGACATAACTCATGTTCAATTCCGGACAGCAAGCCCAGTCTCAGTCCTTGAAAGCAGCAGCTTCTGCTCTAAAGAGAAGTCTGCACCTCATAGTCCGGAGATTTACATCCCCGTGCCATGTGGGCGTGCACGCAGCAAGCGTGCACGTCCGGCAGCCTTCAATCCTCATCCAGTTATGCAGCTCATCTCGCCGGCATCCTCTACTGGCGAGAACACACAGCACAATGCCACCACGTCAAAGTCCTCCTCAGACTCTGAGAATTTTGCAGAGTCCACAATCAAGACACCAAAGCAGGCTTTTGGTGAGCACAAGAAGAAGAAAAAGATCAAAGTGAGTTTCTCAGCTGGTCAAGACCACAATGCTGCACCATCACAGGCAGTGAGGAAATGTGTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCCTGTGGCGTGCGCTACAAGTCAGGCCGGCTCTTCCCAGAGTACCGGCCGGCTGCCAGTCCAACGTTCTGTGCAGCTGTGCACTCCAACTCTCACAAGAAGGTCCTTGAAATGAGAAACAAAACAGCCACCATATCTGGTTATGCAGCTGATTCAGCTGCCACACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA 1008 0.5198 MTGNFIDDIDCGSFFDHIDDLLEFPEETAATDTTAVGPVAPPTNFWSTESDSLPTANTVFSSNSVPDLSTELSVPYEDIVQMEWLSNFVEDSFSGGSLTMQQEQPQCTNKDDITHVQFRTASPVSVLESSSFCSKEKSAPHSPEIYIPVPCGRARSKRARPAAFNPHPVMQLISPASSTGENTQHNATTSKSSSDSENFAESTIKTPKQAFGEHKKKKKIKVSFSAGQDHNAAPSQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTATISGYAADSAATPELIPNTNSSLSLEYM* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00951 335 MobiDBLite consensus disorder prediction 173 217 - -
Lapu4g00951 335 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Lapu4g00951 335 PIRSF Txn_fac_GATA_plant 2 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu4g00951 335 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Lapu4g00951 335 Gene3D - 235 285 IPR013088 GO:0006355|GO:0008270
Lapu4g00951 335 PANTHER GATA TRANSCRIPTION FACTOR 15 318 - -
Lapu4g00951 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 298 - -
Lapu4g00951 335 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Lapu4g00951 335 FunFam GATA transcription factor 231 316 - -
Lapu4g00951 335 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Lapu4g00951 335 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Lapu4g00951 335 MobiDBLite consensus disorder prediction 173 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00951 Lapu-Chr4 24882573 24888748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00951 18 305 C2C2-Gata Transcription Factor Family AT4G32890 37.500 2.87e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu4g00951 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00951 - - gmx:100792644 547.74