Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00946 ATGTCCTTGCTAACGGTGGCGTACCAAAGAGGGTCAGGTGAGTTTATCCGGTTCACCGCGGATCACGGTGGCGGTGATGGTTGTGACGATGGTGAATATGGCTATGGACATGATGGTGGTGGTAGTGGCAGCGGTGGTTCACCAGGATTCAATTTTAACCAAGGGATGCAGCAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGGAAATGGTTTCAGCTTTGACACACGTGGTTTCATCTGGGTCTGGCCAGAGGAGCACCGAATGGATCCAGCAAAGTGGTTATCCTATGATGTCAGGTTTTGAACATGCACCATCTCTTTCTCGTTTGTCTTCTTTCTCTTCTCCTTCTCCTTCTTCTGGACCCTCTTCTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCCCTTCTTCACATAACTTGATGCAACAACAAAGTGCTCCAACACTCTTCAGAACCCTCAATGACTTCATGCTGCCTTCTCAAGCAGACTCATCTTCAGTGACCGAAGAAGCTGCCACCTCCACAACTACTACTGTAACCGCAGTCACAACGGCTGTTACTGAAACAACAGCAGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGTGTGAGACAGAGGCCTTGGGGAAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACGTTTGACACTGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTACCAAGCTGCCAAAAGACTAACCGTTTCTGACTCTTCCACCACTCAATTCCGGCCACTCTCCGCGGCCGTGGCGGCGCCACCCTTCATTCAGTCGCCACAGATGCAGGGCTCCTCTGACATGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACATCAGCATCAGCATCAACAACAACAACCACAACCCTCTAGTTTTCTTCAGCAGTTGTACTATAATGCACAGTTGGCTTCACTTCAATCACCTTCATTGTTACCATCATCACCTTCATTTTCTTCTTCTGTGTCACCAACTCCATTCCCATTATACTCAACATCTGCTCAATTTTCCTCTGCTTCATTTCCCACGTTTTCAAGTCAACAAATGAGCTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCGTCAGGCCAGATATTCCGCCGTCAACATGGTCCGATACTGGTGGCCAGCCACCACCTTCCGGTTGA 1341 0.4877 MSLLTVAYQRGSGEFIRFTADHGGGDGCDDGEYGYGHDGGGSGSGGSPGFNFNQGMQQQGEVTMQGGSLVSGYNRGDPELREMVSALTHVVSSGSGQRSTEWIQQSGYPMMSGFEHAPSLSRLSSFSSPSPSSGPSSVGQKRGREEQETNTPSSHNLMQQQSAPTLFRTLNDFMLPSQADSSSVTEEAATSTTTTVTAVTTAVTETTAGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPYQAAKRLTVSDSSTTQFRPLSAAVAAPPFIQSPQMQGSSDMIRDYLQYSQLLQSDFQHQHQHQQQQPQPSSFLQQLYYNAQLASLQSPSLLPSSPSFSSSVSPTPFPLYSTSAQFSSASFPTFSSQQMSYFQPLESLPPAGVRPDIPPSTWSDTGGQPPPSG* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00946 446 MobiDBLite consensus disorder prediction 418 446 - -
Lapu4g00946 446 MobiDBLite consensus disorder prediction 118 140 - -
Lapu4g00946 446 MobiDBLite consensus disorder prediction 34 55 - -
Lapu4g00946 446 Gene3D AP2/ERF domain 215 275 IPR036955 GO:0003700|GO:0006355
Lapu4g00946 446 FunFam Ethylene-responsive transcription factor 2 215 274 - -
Lapu4g00946 446 PRINTS Ethylene responsive element binding protein signature 217 228 IPR001471 GO:0003700|GO:0006355
Lapu4g00946 446 PRINTS Ethylene responsive element binding protein signature 239 255 IPR001471 GO:0003700|GO:0006355
Lapu4g00946 446 Pfam AP2 domain 216 265 IPR001471 GO:0003700|GO:0006355
Lapu4g00946 446 SUPERFAMILY DNA-binding domain 216 274 IPR016177 GO:0003677
Lapu4g00946 446 ProSiteProfiles AP2/ERF domain profile. 216 273 IPR001471 GO:0003700|GO:0006355
Lapu4g00946 446 PANTHER DNA-BINDING DOMAIN 162 349 IPR044808 GO:0003700|GO:0009873
Lapu4g00946 446 SMART rav1_2 216 279 IPR001471 GO:0003700|GO:0006355
Lapu4g00946 446 MobiDBLite consensus disorder prediction 113 160 - -
Lapu4g00946 446 CDD AP2 216 275 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00946 Lapu-Chr4 24732362 24735031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00946 213 285 AP2-EREBP Transcription Factor Family AT2G33710 76.712 3.93e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu4g00946 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00946 - - vun:114180418 580.482