Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00942 ATGATTCAAGGTGGAGATCCTACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAACGATGAGATACGAGAATCACTGAAGCATAATGCAAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAACGGAAGTCAATTCTTCATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCAAACTGGGACAGGAGACCGGCCACTTGCAGAGATAAGGCTCAATCGTGTAACAATACATGCTAATCCTCTAGCTGGTTGA 336 0.4196 MIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGTGDRPLAEIRLNRVTIHANPLAG* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00942 111 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 103 IPR002130 GO:0000413|GO:0003755
Lapu4g00942 111 SUPERFAMILY Cyclophilin-like 1 108 IPR029000 -
Lapu4g00942 111 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Lapu4g00942 111 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Lapu4g00942 111 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Lapu4g00942 111 Gene3D - 1 111 IPR029000 -
Lapu4g00942 111 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 1 104 IPR044666 -
Lapu4g00942 111 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 104 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00942 Lapu-Chr4 24673070 24680525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00942 1 108 U-box Gene Family AT5G67530 55.556 1.36e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00942 K12734 - nnu:104611869 222.246