Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00938 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCAGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAGTGCAAAGCTCGTTGGTACGAGTGGCTTGATCCCTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTCATGCCCACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACCCCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTAAAAGATGAGAACTATGAGCCAGGCGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGTCCTGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTGGCCAACACTAAGGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAGAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCATTTGAGAAAAGGCCTCCTCCTGGGTTTTTTGATGTTGCGGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACCATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATATTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATATTGCATGCTAACAAACTGAATGATCCAGAAACAGTAAGAAAGAGGTCCAAATTGATGCTTCCACCACCCCAGATATCTGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCTAGTGACCTTGCAGGGAGTCAGGAACTTTCTGAAGGTAGTGGTGCTACTCGTGCTCTTCTGGCTAATTATGCACAGACACCTGGTCAAGGGGTGACTCCATTGCGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGTGAAAATCCAGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAGGACATTCAAACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGTGCAGGCCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCCCTGAGGGATGAGCTACGTATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGCTGCAGAGACAGGCAGATATGAGAAGAAGTCTGCATTCTGGTTTAGGAAGCCTTCCACAGCCCAAGAATGAGTACCAAATAGTGATGGAACCAGTTTCAGAAGACACCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCTAGACAGCAAGCATTACTTAGAAAACGATCCAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCTGCTGCGTCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGATGGGGACAAGAGTTCCTTTGTCCCACCAACGTCTATTGAGCAAGCTGATGAGATGATTAGAAAGGAGCTTCTAACTTTACTTGAGCATGACAATGCCAAGTATCCACTTGATGATAAAGTGACTAAGGAGAAAAAGAAAGGAGTCAAGCGTTCAGTAGATGGGTTTTCTGTCCCTGTGATAGAAGATTTTCAGGAAGATGAAATGAAAAATGCTGATGAGTTGATAAAGGAAGAAGTCCAGTATCTTTGTGCAGCAATGGGACATGAAAATGAGCCCCTTGATGAATTTATTGAAGCGCATCGAACCTGCCTGAATGATCTTACGTACTTTCCTACCCGCAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGACGGTTATCACACAAGGATATGAGATGAGAGTAAAGAAAAGTATCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACGGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAGCAATTAGCAGCATCACATAGGATAAACAATTTGTGGAGTGAAGTACAAAAGCAAAAGGAACTTGAAAAAACTTTGCAAAATAGGTACGGGAGTCTAATTGAAGAGCTGGAGAAGACGGAAAATGCCATTAACCAGTGCAGATTAAAAGCACAGCAGCAAAAAGAAATTGCAGCAAACAATGCTCTTACTGAGGCCAACGAGTCCAAGGCTGATGAAACTGATGTACAAGATACGGAGAGTTATAAAGTTGTACCTCACTCAGTAGAGGATGGAAATGCTCTAGCAGTAACAGTTGAGTCATCACATGATGGAACTGCTGACCAGCAAGTAGATATTGTGCAAGACCAGTCTACTTCTAGCCCCAGTCATGACATGAATGTGGATTCTGATAAAATGGAGGCAATACATGACAGTGATGTTAAATTAGCAAATGCTTCACCAGCTGTTGAGAATGTTATTGAAAAAGTGGAAGATACCAGTCCTACTGATGGCGATGGCGATACTGACAATGGGAAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCTCAATCATGATGTAGTTGCGAATGCTGTAAACACACTGGAGAGCAGCATGGAAGAAACCAATGCTATTACCGAGGAAACAAATTAG 2922 0.4357 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELSEGSGATRALLANYAQTPGQGVTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELRINEDMNMHDSTKLELQRQADMRRSLHSGLGSLPQPKNEYQIVMEPVSEDTEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVTKEKKKGVKRSVDGFSVPVIEDFQEDEMKNADELIKEEVQYLCAAMGHENEPLDEFIEAHRTCLNDLTYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDDKEKMVRLEKKVTVITQGYEMRVKKSIWPQIEATFKQMDIAATELECFKALQKQEQLAASHRINNLWSEVQKQKELEKTLQNRYGSLIEELEKTENAINQCRLKAQQQKEIAANNALTEANESKADETDVQDTESYKVVPHSVEDGNALAVTVESSHDGTADQQVDIVQDQSTSSPSHDMNVDSDKMEAIHDSDVKLANASPAVENVIEKVEDTSPTDGDGDTDNGKNVSEMGASMEINSLNHDVVANAVNTLESSMEETNAITEETN* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00938 973 CDD SANT_CDC5_II 55 106 IPR047240 -
Lapu4g00938 973 MobiDBLite consensus disorder prediction 914 935 - -
Lapu4g00938 973 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lapu4g00938 973 Gene3D - 5 59 - -
Lapu4g00938 973 MobiDBLite consensus disorder prediction 399 413 - -
Lapu4g00938 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lapu4g00938 973 Gene3D - 60 114 - -
Lapu4g00938 973 Coils Coil 167 187 - -
Lapu4g00938 973 SMART sant 58 105 IPR001005 -
Lapu4g00938 973 SMART sant 6 55 IPR001005 -
Lapu4g00938 973 Pfam Myb-like DNA-binding domain 10 70 - -
Lapu4g00938 973 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lapu4g00938 973 Coils Coil 782 816 - -
Lapu4g00938 973 MobiDBLite consensus disorder prediction 379 448 - -
Lapu4g00938 973 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lapu4g00938 973 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Lapu4g00938 973 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 802 IPR047242 GO:0000398|GO:0000974
Lapu4g00938 973 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lapu4g00938 973 Coils Coil 682 716 - -
Lapu4g00938 973 CDD SANT 10 53 IPR001005 -
Lapu4g00938 973 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lapu4g00938 973 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lapu4g00938 973 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00938 Lapu-Chr4 24643675 24650485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00938 1 835 MYB-Related Transcription Factor Family AT1G09770 75.924 0.0 1250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g00938 Myb_Cef 1.3e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00938 K12860 - gmx:100801352 1612.05