LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu4g00914	ATGTCACAGAGAACCGCAACATCCTTGTCTTCCTCCAGGGATACATGGATTTATGATGTCTTTCTGAGTTTTAGAGGTGAAGACACTCGTTTACAATTTACTGATAATCTCTACCATTCGTTGTGCCGAAAGGGGATTCATACTTTCATCGACGAGGATGGTCTTAGAAGAGGGGAAGAAATTACCCCTGCTCTCTTCGAGGCAATTCAAAATTCAAGGATTTCCATCGTTGTCTTCTCCAAAAACTATGCATCTTCATCCAATTGTTTAAATGAACTTGTAGAGATCCTTGATTACGCGAAGGAAGAAGGTCGATCAATTTATCCAGTATTTTATATGGTGGATCCATCACATGTTCGACATCAGACTGGAACTTATGCAGAAGCATTCTCAAAACACGAAGCTAGGTTCTGCAATGATGTTGACCGTGAGAAGGTACGAAAATGGAGGAAGGCTTTACATGAAGCAGCTAATCTATCAGGCTGGCATTTCCAACATGGGTCTCTACCAGAATATAAGTTTATCAGAAAGATTGTTGAAGAGATCTCTGAAAAGATAAATTACACCCCTTTATATGTTGCTGATAATCCAATTGGGCTGGAGAATGCAGTGCTAGGAGTGACATCTCTCTTTGGAGATGGGTCTGGTGTCAACATGATTGGAATTTATGGCATCGGGGGTATAGGTAAAACCACGATTGCTCGTGCTGTGTATAATAGTATTTTTTGGCATTTTGAAGGTTCGTGTTTTCTACCTAACATAAGAGAAAAGGCAATCAGTAAGCGTGGGATTGTCCAACTCCAAGAAATGCTACTTTCTGATATACTCAAGGGAAAATATATTGAAGTGGGAGATGTCAACAGAGGAATACCAATAATAAAAAGGAGACTTCAACAGAAGGAGGTCCTTTTAGTTCTTGATGATGTTGACAAATTAGAGCAGTTAAAGGCACTTGCAGGTGATTATATTTGGTTTGGCGCTGGAAGTGTAATCATCATCACTACAAGAGACAAGTACTTGCTCGATGCTCATGGGGTGGTAAACTTATATGAGGTTAAACCATTAAATGTTGAAAAAGCTTTTGAATTGTTTAACTGGCATGCCTTCGAAACTAGTAAAGTTGGTCCACCTTATATGAATATTTCCAACCGTGCAGTTTCTTATGCGTGTGGCCTTCCGTTGGCTTTGGAAGTTATAGGATCCCACTTATTTGGAAAAAGTTTAAGTGAGTGCAGTTCTGCATTAGATAAATATGAAAGTATCCCTCATGAGACGATTCATGAAAAACTTAAAGTAAGCTATGATGGTTTGGAAGAAAATGAGAAGGGAATTTTCCTAGACATTGCTTGTTTCTTCAATAACTGTGAACTGGGCAATGTCACACCAGTGCTACAAGCTCACGGTTTTCATGTAGAAGATGGTTTGAGAGTGTTGGTTGACAGATCTCTCATAAAGATTGATTCTTCTGGTTTTGTCAGAATGCATGACGTAATTCGAGACACAGGTAGAGAAATTGTAAGGCAGCAATCAACACTTGAGCCAGGCAGACGAAGTAGATTATGGTTTAACGTGGACATTGTTCATGTTTTGGAAGAAAATACGGGATCTGATAAAATAGAATTCATAAAGCTTAAAGGGTACAACAATATACAAGTTCAATGGAATGGAAAAGCCTTCAAGGAAATGAAGAACTTGAGAATTTTGATTATTGAAGATTCAACCTTTTCTACAGGCCCCGAGCATCTACCAAATAGCTTGAGAGTGCTAGACTGGAGTTGCTATCCTTCACCGTCTTTACCTTCTGATTTCAATCCCAAACGTTTAGAGATGCTCCTTATGCCTAAAAGTTGCCTTGAGATATTCAAACCACAGAAGATGTTGGAATCATTGTCTGTAATAAACCTTCAAGATTGCAAGTTCTTAACTGATCTACCGAGCCTACGAGAAGTACCACTCTTAACAACTCTGCGTCTCGATTATTGCTCTAATTTAGTTAAGATTGATGAATCAATTGGGTTTCTTGATAAGCTTCGGTTCTTGAGTGCTAAAGAATGCACCGAGCTGAAAACTCTTGCACCCTGTATCATGTTGACATCTCTCGAAACTTTGGATCTTCGGTGGTGCATAAGTCTCAAGAGTTTCCCAGAAGTATTGGGAAAGATGGAGAAAATAAGGACAATATATTTAGACGGCACAGACATAGACAAATTGCCATTTTCAATTAGAAATTTTGTTTCGCTCGAACTATTGTCCTTGAAGGGATGCGTAAGGCTTCATCAGCTACCAGGTAGTATAAGCATAATGCCGAAAGCTAAAGTGCTATTGGGTTCTGAGCATGAAGCAGATCAAATTTTTGAAGAAGAGTTGAGTTCAGAGGAGTCTCCAAGGGCCATGCTTATTACAGGG	2406	0.3928	MSQRTATSLSSSRDTWIYDVFLSFRGEDTRLQFTDNLYHSLCRKGIHTFIDEDGLRRGEEITPALFEAIQNSRISIVVFSKNYASSSNCLNELVEILDYAKEEGRSIYPVFYMVDPSHVRHQTGTYAEAFSKHEARFCNDVDREKVRKWRKALHEAANLSGWHFQHGSLPEYKFIRKIVEEISEKINYTPLYVADNPIGLENAVLGVTSLFGDGSGVNMIGIYGIGGIGKTTIARAVYNSIFWHFEGSCFLPNIREKAISKRGIVQLQEMLLSDILKGKYIEVGDVNRGIPIIKRRLQQKEVLLVLDDVDKLEQLKALAGDYIWFGAGSVIIITTRDKYLLDAHGVVNLYEVKPLNVEKAFELFNWHAFETSKVGPPYMNISNRAVSYACGLPLALEVIGSHLFGKSLSECSSALDKYESIPHETIHEKLKVSYDGLEENEKGIFLDIACFFNNCELGNVTPVLQAHGFHVEDGLRVLVDRSLIKIDSSGFVRMHDVIRDTGREIVRQQSTLEPGRRSRLWFNVDIVHVLEENTGSDKIEFIKLKGYNNIQVQWNGKAFKEMKNLRILIIEDSTFSTGPEHLPNSLRVLDWSCYPSPSLPSDFNPKRLEMLLMPKSCLEIFKPQKMLESLSVINLQDCKFLTDLPSLREVPLLTTLRLDYCSNLVKIDESIGFLDKLRFLSAKECTELKTLAPCIMLTSLETLDLRWCISLKSFPEVLGKMEKIRTIYLDGTDIDKLPFSIRNFVSLELLSLKGCVRLHQLPGSISIMPKAKVLLGSEHEADQIFEEELSSEESPRAMLITG	802

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu4g00914	802	Gene3D	Ribonuclease Inhibitor	536	694	IPR032675	-
	Lapu4g00914	802	Gene3D	Ribonuclease Inhibitor	695	793	IPR032675	-
	Lapu4g00914	802	SUPERFAMILY	L domain-like	544	774	-	-
	Lapu4g00914	802	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	448	IPR027417	-
	Lapu4g00914	802	Pfam	TIR domain	18	188	IPR000157	GO:0007165
	Lapu4g00914	802	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	162	IPR035897	-
	Lapu4g00914	802	PRINTS	Disease resistance protein signature	219	234	-	-
	Lapu4g00914	802	PRINTS	Disease resistance protein signature	695	711	-	-
	Lapu4g00914	802	PRINTS	Disease resistance protein signature	296	310	-	-
	Lapu4g00914	802	PRINTS	Disease resistance protein signature	389	403	-	-
	Lapu4g00914	802	Pfam	NB-ARC domain	211	420	IPR002182	GO:0043531
	Lapu4g00914	802	Gene3D	-	355	438	IPR042197	-
	Lapu4g00914	802	ProSiteProfiles	TIR domain profile.	16	186	IPR000157	GO:0007165
	Lapu4g00914	802	Gene3D	-	12	194	IPR035897	-
	Lapu4g00914	802	SMART	till_3	17	159	IPR000157	GO:0007165
	Lapu4g00914	802	Gene3D	-	201	347	IPR027417	-
	Lapu4g00914	802	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	769	IPR044974	GO:0006952
	Lapu4g00914	802	SUPERFAMILY	"Winged helix" DNA-binding domain	426	531	IPR036390	-
	Lapu4g00914	802	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu4g00914	Lapu-Chr4	24071979	24081389	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu4g00914	9	765	WRKY Transcription Factor Family	AT4G12020	33.077	1.04e-96	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu4g00914	-		-	pvu:PHAVU_004G046400g	1280.39