Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00908 ATGCTTCTAAAAGCACCTCTCTGTTATCTGAACCTAAAACCTCCACAAGTTGCATCCATGGCGGGAGCTACGGGAAGAACCCTCTTCACCTTCTCCTTCTCTTCCTCTTCTTCCTATTCTTCTTTCACGCGTTTCCTCGCCAAGCGCCTCCCACTCCGCAAACCCCTTCCGCTTCTCCCCCGCCTCCGCCCCCTCTGCTCCGTTTCCACTGCGCCGGAAACTGCCGACGCGAAACATTCTTTGCTCCTCGAGAGGCTTCGGGCGCGACACCTCAGGGATGCGGCGAGAGTTGCCCCTGAACCGAGGAAGAAGGCCAGGGGCGCCGCCGTTGCGGAGGCAGAGAAAGAGAGGGTGAAGGAGGAGAAGAAGGCGGTTGCGAGTTTCGAGGAGTTGGGAGTGAGTGAGGAAGTTATGGGGGCTGTTAGGGAAATGGAGATTGAAGTACCCACTGAGATACAGGGAATTGGCATCCCCGCAGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTTGCCTACTTGCTTCCCCTTGTTCAGTTGCTACGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCTCGAGCTGTTGTGTTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGAGGTGGCCGGATTAGGCCTCAGGAGGATTCGCTTAACAACCCCATTGATATGGTAGTTGGTACACCTGGCAGGGTTCTTCAGCATATTGAGGAGGGAAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTGGGCCCATTAAAAAATCGTGCTTCAAAACCTGGTGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAACCAAGCCTTGCAAAGGGTAACAGGGTGATGGTTTTCTGTAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTTCGTTGGTTTGCACGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGTAGGGACATTGGAAGGACCCAAATCACAGAGCAGAAGGGAAAGGGTAGAAAAATGGTTAAAGTTTCAAAAGTCAAGGGCAAATTTGGTGGTCGTGCCAGTTCTGGAAATAGCGGATCAGGTATGAAATCTGGTAAAGGGTCACCAGTCAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTAGCACCCTCAGAAAAAGTTCTTCAGAGAAGAGGCAAACAAGTAAAGCGGCCAGTGACACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTCGGGGAAAAAAGTCATCTTCAAATAACAAAGATTCGGTTTTGTGA 1902 0.4669 MLLKAPLCYLNLKPPQVASMAGATGRTLFTFSFSSSSSYSSFTRFLAKRLPLRKPLPLLPRLRPLCSVSTAPETADAKHSLLLERLRARHLRDAARVAPEPRKKARGAAVAEAEKERVKEEKKAVASFEELGVSEEVMGAVREMEIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPGGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPSLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRKNESLEAITKESVRRDIGRTQITEQKGKGRKMVKVSKVKGKFGGRASSGNSGSGMKSGKGSPVKSMKKGINVSKSGKSSSASSTLRKSSSEKRQTSKAASDTKSTNSKLNVVGFRGKKSSSNNKDSVL* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00908 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 500 IPR027417 -
Lapu4g00908 633 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Lapu4g00908 633 Pfam Helicase conserved C-terminal domain 369 480 IPR001650 -
Lapu4g00908 633 Pfam DEAD/DEAH box helicase 150 333 IPR011545 GO:0003676|GO:0005524
Lapu4g00908 633 MobiDBLite consensus disorder prediction 604 633 - -
Lapu4g00908 633 CDD SF2_C_DEAD 357 489 - -
Lapu4g00908 633 SMART helicmild6 398 480 IPR001650 -
Lapu4g00908 633 Coils Coil 111 131 - -
Lapu4g00908 633 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 80 517 - -
Lapu4g00908 633 Gene3D - 355 523 IPR027417 -
Lapu4g00908 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 344 IPR014001 -
Lapu4g00908 633 SMART ultradead3 145 364 IPR014001 -
Lapu4g00908 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 522 IPR001650 -
Lapu4g00908 633 MobiDBLite consensus disorder prediction 576 594 - -
Lapu4g00908 633 CDD DEADc 137 336 - -
Lapu4g00908 633 Gene3D - 93 345 IPR027417 -
Lapu4g00908 633 MobiDBLite consensus disorder prediction 524 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00908 Lapu-Chr4 23939031 23951636 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00908 125 502 Eukaryotic Initiation Factors Gene Family AT3G19760 27.273 4.12e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00908 - - gmx:100805709 935.636