Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00905 ATGAGAAGAAGAGGCAAAGTGCTTATTATGCTCTCTTTTTCTCTGCTCTCACCGGTAAAGCACAACCCTTTAGCGAAATCAACACCACTCACTTCTTTATTTCGAAGTAGCATCACATTTTCAACTTCTTCCTCCTCCATAACCCCTCCTATCGAAGAACCAAAGACTTCATCGTCCAAGTCCCAAAGGAATTCACTGATTTTGGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCCCCAAAATACTCAAAGGGTACCCCTCAAGTGGGTCCAACTTCAGTTCCATTAAGTTCAGATGCTTATACTGAGAAGGTGGTCCAAAAGGGTGTGCAGAATGAGAATGAACCCACCGTGGTGATCAGAAGTTTGAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGAGGAGATTGGGGAGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTGTGTTGCTGAGTTCACCATCTGAACCTGACAGAACATTGTCCTTCTTGTTGCCCCTTATTCAGTTGTTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAACATCCGCAAGCCATCGTGCTATGTGCTACGGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCCAAATATATCATCCATGGCACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATGATGGGCCGTCGCAAGCATCAATTGGCCTAATTATTGGAACTCCTTGTGAGATTCTTGAATACATTGAAGAGGGTAGCATTGTTCCTTCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTAGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCACTACAAGATCATGAATCAAAATCTGCTGTCAAAAGATTACAAACTATTTTGGCCATTTCAACCTTGAAGGAGGTTTTGGGTGAACAATCCCCCATTGTAAAGCATCTTGAGCGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAACAAACAGAAGTCTTTCACTTCACGGAGTCTCTTCATGCTCTTAAGAAAAAAGTGGCAGTGGCCATGGATTCCCTTTTGCAACAAGAATAA 1125 0.4293 MRRRGKVLIMLSFSLLSPVKHNPLAKSTPLTSLFRSSITFSTSSSSITPPIEEPKTSSSKSQRNSLILEQFKQRKLKGSPKYSKGTPQVGPTSVPLSSDAYTEKVVQKGVQNENEPTVVIRSLKELGVSEELVEVMEEIGEFIPSEIQCVVIPAILEGKSVLLSSPSEPDRTLSFLLPLIQLLRRDRELLGSNSKHPQAIVLCATEEKAAQCFNAAKYIIHGTKLKSAKDCASPDDGPSQASIGLIIGTPCEILEYIEEGSIVPSEIRYLVLDEADCMLGSGLGPEIHKILRPLQDHESKSAVKRLQTILAISTLKEVLGEQSPIVKHLERHHAGNISAMSLEMEQTEVFHFTESLHALKKKVAVAMDSLLQQE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00905 374 SMART poly_2 311 373 IPR002004 GO:0003723
Lapu4g00905 374 Gene3D - 320 373 - -
Lapu4g00905 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Lapu4g00905 374 Pfam DEAD/DEAH box helicase 146 315 IPR011545 GO:0003676|GO:0005524
Lapu4g00905 374 SUPERFAMILY PABC (PABP) domain 315 369 IPR036053 GO:0003723
Lapu4g00905 374 MobiDBLite consensus disorder prediction 41 64 - -
Lapu4g00905 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 55 317 - -
Lapu4g00905 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 311 IPR027417 -
Lapu4g00905 374 MobiDBLite consensus disorder prediction 76 96 - -
Lapu4g00905 374 SMART ultradead3 140 332 IPR014001 -
Lapu4g00905 374 Gene3D - 96 319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00905 Lapu-Chr4 23886899 23899571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00905 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 26.257 1.80e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00905 - - vra:106768009 603.594