Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00903 ATGGCAACTGCAATTTCTGCTCCTTTGGCGGTTCCAGTAACAACATTGAATGGTTCGCAATTCAGGAATGCCTCTCTGTATGTTGGAGATCTGGACGCCAATGTGTTTGAAAGTCAGTTGTTTGATCTGTTCAATCAAGTGGCTCAAGTGATTTCGATTAGGGTTTGCCGGGATCAGACTAAGCGATCTTCACTAGGCTATGCATATGTCAATTTTACCAATGCTCAAGACGCTGCTAATGCCATGGCACATCTGAACTTCACTCGCCTGAATGGAAAACCTATCCGTATCATGTTTTCTCAGCGTGATCCCAGCATTAGAAAGAGTGGATGTGCAAATGTGTTCATTAAGAACTTGGACTCATCTATAGATAACAAGGGACTCTATGACACTTTTGTTGCCTTTGGAACTGTGTTATCTAGTAAGTTAGCGGTTGATAGCAATGGTCAATCAAAAGGATATGGATTTGTGCAATTTGACAATGATGAGGCTGCTCAGAATGCTATCAAGAAATTGAATGGCATGTTAATTAATAATAAAAAAGTTTATGTTGGACTTTTTGTTCGGAGTCAAGAAAGGGTCCAATCTAATGGATCACCGAAGTTTACTAATGTGTATGTGAAAAATTTTTCTGAAACATACACTGATGAAGACCTTAAGCAACTCTTTAACACCTATGGTACCATAACTAGTGCTGTGGTTATGAAAGATGAAGATGGAAAGTCCAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTAATGCAGTTGAAAGGTTAAATGGAACAACCATCAACAATGACCAGGTTCTATATGTAGGAAGGGCTCAGAGAAAGGCAGAAAGAGAGGCAGAGTTAAAAGCCAAATTTGAACTGGAGAAAAGAAGTAGATTTGAGAAACTACAAGGTGCTAACCTGTATCTGAAAAACTTTGATGACAGCTTTAATGATGAAAGATTGAAAGAGATGTTTTCAGTATTTGGAAAAACAACATCTTGTAAGGTAATGGTTGATGCCCTTGGACGTAGCAAGGGTTGTGGTTTTGTTGCTTTCTCGACTCCAGAAGAAGCCACTGCAGCTCTGAATGAAATGAATGGTAAGATAATTGGACAAAAACCTCTTTACGTTGCAGTAGCTCAACGTAAAGAACAAAGAAAGGCTAATCTGCAGGCTCAGTATTCTCATGTGCAAATTTCTGGATCAATTCCATCTCTTTCTGCTGGAATTACTGGGTATCATCGTCCTCATTTATATGTTAGTCCAGGAACTGGTTTTCTTTCACCTCAACCAACAGGTTACAGTTTCCAGCAGCCATTCATTCCGAACATGCGTGCTGTTGCACCAAGTTTTATTATGCCATATCATCCTCAGAGACAGGATTTATCTGGACGATTGGGTGTTAGTTCAAGGATTGGAAAGCTGCAACAGATGTCTTCTAAGCAAGGACTTACATACATGGGAGATGCTGAAAATAACATACATGCTCAAAATCTGGCTGCTAAGGATGTTAAAGCTTCATCTAATACATTTGCTTCAGTTCTGGGTAAAGCTTCTGGTGGTACATCATCTACTACACTTGCTTCAGCTTTGGCTTCTGCTAGTCCTGAAAATCAACATAGGATGCTGGGTGAACATCTGTATCCATTAGTGGATCGTCTTACTCCAAATAATCAGACAGCAAAGGTAACAGGAATGTTACTTGAAATGGATCAGTCAGAAGTTATTAATTTAATTGAGTCTCCTGAAGATTTGAAGACAAAGGTGTCTGAGGCAATGCAAGTACTTAATGATTCATCATCTTCTTAG 1815 0.3928 MATAISAPLAVPVTTLNGSQFRNASLYVGDLDANVFESQLFDLFNQVAQVISIRVCRDQTKRSSLGYAYVNFTNAQDAANAMAHLNFTRLNGKPIRIMFSQRDPSIRKSGCANVFIKNLDSSIDNKGLYDTFVAFGTVLSSKLAVDSNGQSKGYGFVQFDNDEAAQNAIKKLNGMLINNKKVYVGLFVRSQERVQSNGSPKFTNVYVKNFSETYTDEDLKQLFNTYGTITSAVVMKDEDGKSRCFGFVNFESPDSAANAVERLNGTTINNDQVLYVGRAQRKAEREAELKAKFELEKRSRFEKLQGANLYLKNFDDSFNDERLKEMFSVFGKTTSCKVMVDALGRSKGCGFVAFSTPEEATAALNEMNGKIIGQKPLYVAVAQRKEQRKANLQAQYSHVQISGSIPSLSAGITGYHRPHLYVSPGTGFLSPQPTGYSFQQPFIPNMRAVAPSFIMPYHPQRQDLSGRLGVSSRIGKLQQMSSKQGLTYMGDAENNIHAQNLAAKDVKASSNTFASVLGKASGGTSSTTLASALASASPENQHRMLGEHLYPLVDRLTPNNQTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLNDSSSS* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00903 604 SUPERFAMILY PABC (PABP) domain 529 601 IPR036053 GO:0003723
Lapu4g00903 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Lapu4g00903 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Lapu4g00903 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Lapu4g00903 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Lapu4g00903 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Lapu4g00903 604 FunFam Poly(A) binding protein cytoplasmic 1 like 299 388 - -
Lapu4g00903 604 FunFam Polyadenylate-binding protein 194 289 - -
Lapu4g00903 604 Gene3D - 112 186 IPR012677 -
Lapu4g00903 604 SUPERFAMILY RNA-binding domain, RBD 202 388 IPR035979 GO:0003676
Lapu4g00903 604 Pfam Poly-adenylate binding protein, unique domain 533 598 IPR002004 GO:0003723
Lapu4g00903 604 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 525 603 IPR002004 GO:0003723
Lapu4g00903 604 SMART rrm2_1 308 380 IPR003954 GO:0003676
Lapu4g00903 604 SMART rrm2_1 204 276 IPR003954 GO:0003676
Lapu4g00903 604 SMART rrm2_1 113 185 IPR003954 GO:0003676
Lapu4g00903 604 SMART rrm2_1 25 98 IPR003954 GO:0003676
Lapu4g00903 604 CDD RRM4_I_PABPs 306 384 - -
Lapu4g00903 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Lapu4g00903 604 PANTHER RNA BINDING PROTEIN 22 86 - -
Lapu4g00903 604 FunFam Polyadenylate-binding protein 521 604 - -
Lapu4g00903 604 FunFam Polyadenylate-binding protein 110 193 - -
Lapu4g00903 604 Gene3D - 17 111 IPR012677 -
Lapu4g00903 604 SMART poly_2 537 601 IPR002004 GO:0003723
Lapu4g00903 604 SUPERFAMILY RNA-binding domain, RBD 24 190 IPR035979 GO:0003676
Lapu4g00903 604 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 599 IPR006515 GO:0003723
Lapu4g00903 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lapu4g00903 604 Gene3D - 523 602 - -
Lapu4g00903 604 CDD RRM3_I_PABPs 202 282 - -
Lapu4g00903 604 FunFam Polyadenylate-binding protein 17 109 - -
Lapu4g00903 604 SMART rrm1_1 308 380 IPR000504 GO:0003723
Lapu4g00903 604 SMART rrm1_1 25 98 IPR000504 GO:0003723
Lapu4g00903 604 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lapu4g00903 604 SMART rrm1_1 204 277 IPR000504 GO:0003723
Lapu4g00903 604 CDD RRM2_I_PABPs 110 185 IPR045305 -
Lapu4g00903 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Lapu4g00903 604 Gene3D - 292 396 IPR012677 -
Lapu4g00903 604 Gene3D - 188 291 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00903 Lapu-Chr4 23872032 23875352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00903 23 602 Eukaryotic Initiation Factors Gene Family AT1G71770 54.262 0.0 613