Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00901 ATGGATTTCTCTGAGGGTTATGTATCAAATGAGCATCGCGAGCTTCATCGATCTGCAACAGAAAGTGCGGATCCGTTGTCTGTTTCTCCATTGCAACTTGCTCCAAAATCTTCAAGGTCCCCTGACTCTCCCAGGTCTCCAAAATCTCCGAGGTCCCCAAAGGTGCAAGGCAAGTGCAGCAATCTAAGTCCAAAGAGTCATAGACAATCACATTCTCAAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAAGGTACCTGGGGTGGATTGCTTGATACAGATGACGCAAGCGTTCTTGATCCTAATGATCCAAACTACGATAGCAGTGAGGAATATGACCATTCAAATGAAAAGAAGCCAAACACAGAGCTTGAGAACTACAAGAAAAAGGTTACAATAATAGTGGAGGAATATTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAATTGGGAAAACCAGAGTATGGCTACTATTTTGTCAAAAAACTTGTCTCTATGTCCATGGACAGACATGACAAAGAAAAAGAAATGGCTGCTATTCTGCTATCTGCACTTTATGCTGAAGTATTTGATCCTTCACAAGTTTACAAGGGCTTCAGCAAATTAGTTGAATCAGCAGATGACTTGATTGTAGACATACCAGACGCAGTTGAAGTTCTAGCACTTTTCATAGCCCGGGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTACCGAAAGATTCAAAAGGGGTTAATGTGTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCTCCTCTTCATGCAGAAATCATAGAGAGATGCTGGGGAGGTAGTAAGAACACCACAGTCGATGATGTGAAAGCTAAGATAAACAATTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCCTTCAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCTCTTATAATGGCAATGGAGAGACGTCAAGCAGAATCCCCACTGTTAGATCTGTTGAAGGAAGCAGCTGAAGAAGGTTTCATTAACACTAGCCAGATGTCCAAAGGTTTCAGTCGGTTGATTGACACAGTTGATGACTTATCACTTGATATACCAAATGCACGAGGAATACTGCAGCAACTTATGTCTAAAGCAGCATCTGAGGGTTGGTTATGTGTGTCATCTTTGAAATCACTTTCAGTGGAGCCTGAAAGGAACACAATAGAAGATAGTGCTGCCAAAAGTTTCAAGGTAAAAACTCAGTCCATCATTCAAGAGTACTTCTTATCAGGTGATATATTGGAGGTAAATAGCTGTCTTGAACAAGAAAACAGCAAGAACTGTGCTGCCCTCAATGCAATCTTTGTTAAAAAACTGATAACTCTGGCAATGGATAGGAAGAATAGAGAGAAGGAAATGGCTTCTGTGTTGCTGTCATCTCTGTGTTTCCCAGCTGATGATGTGGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGATACTGCTCTGGACAATCCTGTTGTTGTTGAGGATCTTGCTATGTTTCTAGCCAGAGCAGTGGTGGATGAAGTCCTAGCTCCACAACACCTTGAAGAGATTGGAACACAGTGTTTGGGGCCAGGTTCAATTGGGAGCAAAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTGGCCGGGGAGCGAATCTTGAGGTGTTGGGGTGGTGGGGGTAGTAGCAGGCCTGGATGGGCGTTTGAGGATGTGAAGGACATGATTGGGAAGCTGTTGGAAGAGTATGAGTCTGGAGGAGAAATAAAGGAGGCATGTCGCTGCATGAAAGAGTTAGGAATGCCATTTTTCCATCATGAGGTTGTTAAGAAAGCTTTGGTGAGAACCATTGAAAAGAAGAATGAGAGGTTGTGGGGTCTTCTCAAGGAGTGTTTTGAATCGGGACTAATAACCATGAATCAAATGGTGAAGGGTTTCGGAAGGGTTGCAGAATCTCTTGATGACTTGGCCCTAGATGTTCCTGATGCTAAAAATCAGTTTGCATACTATGTTGAAAGAGCAAAGACTAATGGATGGTTGGATAATTCATTTTGTTTCAGCAAACAGGAACATGCAACAGAGAATGGCACTCACTAA 2169 0.4219 MDFSEGYVSNEHRELHRSATESADPLSVSPLQLAPKSSRSPDSPRSPKSPRSPKVQGKCSNLSPKSHRQSHSQKDGRPKKGGSGGKGTWGGLLDTDDASVLDPNDPNYDSSEEYDHSNEKKPNTELENYKKKVTIIVEEYFATDDVVATMNEVKELGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYAEVFDPSQVYKGFSKLVESADDLIVDIPDAVEVLALFIARAVVDDILPPAFLKKQMAYLPKDSKGVNVLKKTEKSYLAAPLHAEIIERCWGGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAESPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLSVEPERNTIEDSAAKSFKVKTQSIIQEYFLSGDILEVNSCLEQENSKNCAALNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPGSIGSKVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAFEDVKDMIGKLLEEYESGGEIKEACRCMKELGMPFFHHEVVKKALVRTIEKKNERLWGLLKECFESGLITMNQMVKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTNGWLDNSFCFSKQEHATENGTH* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00901 722 MobiDBLite consensus disorder prediction 109 125 - -
Lapu4g00901 722 ProSiteProfiles MI domain profile. 595 714 IPR003891 -
Lapu4g00901 722 Gene3D - 416 571 - -
Lapu4g00901 722 Gene3D - 115 266 - -
Lapu4g00901 722 MobiDBLite consensus disorder prediction 1 20 - -
Lapu4g00901 722 ProSiteProfiles MI domain profile. 427 548 IPR003891 -
Lapu4g00901 722 Gene3D - 278 411 - -
Lapu4g00901 722 Gene3D - 579 711 - -
Lapu4g00901 722 Pfam MA3 domain 597 705 IPR003891 -
Lapu4g00901 722 Pfam MA3 domain 294 403 IPR003891 -
Lapu4g00901 722 Pfam MA3 domain 130 240 IPR003891 -
Lapu4g00901 722 Pfam MA3 domain 429 538 IPR003891 -
Lapu4g00901 722 SUPERFAMILY ARM repeat 289 409 IPR016024 -
Lapu4g00901 722 MobiDBLite consensus disorder prediction 1 125 - -
Lapu4g00901 722 MobiDBLite consensus disorder prediction 22 67 - -
Lapu4g00901 722 FunFam programmed cell death protein 4 118 271 - -
Lapu4g00901 722 SUPERFAMILY ARM repeat 425 585 IPR016024 -
Lapu4g00901 722 ProSiteProfiles MI domain profile. 292 413 IPR003891 -
Lapu4g00901 722 SUPERFAMILY ARM repeat 122 286 IPR016024 -
Lapu4g00901 722 FunFam programmed cell death protein 4 417 572 - -
Lapu4g00901 722 FunFam Programmed cell death protein 4 278 414 - -
Lapu4g00901 722 SUPERFAMILY ARM repeat 592 710 IPR016024 -
Lapu4g00901 722 PANTHER PROGRAMMED CELL DEATH 4 18 708 IPR039778 GO:0045892
Lapu4g00901 722 SMART ma3_7 129 240 IPR003891 -
Lapu4g00901 722 SMART ma3_7 596 705 IPR003891 -
Lapu4g00901 722 SMART ma3_7 293 404 IPR003891 -
Lapu4g00901 722 SMART ma3_7 428 539 IPR003891 -
Lapu4g00901 722 ProSiteProfiles MI domain profile. 128 249 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00901 Lapu-Chr4 23847051 23849786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00901 603 705 Eukaryotic Initiation Factors Gene Family AT5G57870 33.019 2.45e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00901 - - gmx:102668745 1309.66