Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00898 ATGAGTTTCAAGGATGAATGGTCTATGATTGCTGGAAGATTACCAGGACGCAGTGAAGAAGAGATAAAGAAGTACTGGAATACGTATTTGAGCAAGGAGATGGAAGAAGAGAAGAAAATTGGAAGCAGAAGTGTGAGAAGTAGCAGTAGCATGGCTAGTGTTCAATCTCCATGGTTAAAATTTAGGTATGGGAAATTCATGACATTAGTTGCCACAAATGTTGTTGAATTCCTGGCAAAGGCTATTGGCTATACCGAAATAAAGCAAAGATCACTTCTCATTTCTATGGAGAACTATGTTACACTTCTTCTTGAAATTGGGAAACCGATCTTCACCCCTTCTTGA 345 0.3884 MSFKDEWSMIAGRLPGRSEEEIKKYWNTYLSKEMEEEKKIGSRSVRSSSSMASVQSPWLKFRYGKFMTLVATNVVEFLAKAIGYTEIKQRSLLISMENYVTLLLEIGKPIFTPS* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00898 114 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 51 - -
Lapu4g00898 114 Gene3D - 1 55 - -
Lapu4g00898 114 SUPERFAMILY Homeodomain-like 5 34 IPR009057 -
Lapu4g00898 114 CDD SANT 4 30 IPR001005 -
Lapu4g00898 114 ProSiteProfiles Myb-like domain profile. 1 30 IPR001005 -
Lapu4g00898 114 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 34 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00898 Lapu-Chr4 23749258 23750437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00898 5 81 MYB Transcription Factor Family AT1G66370 36.250 3.83e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g00898 GUCT 7.2e-06 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00898 K16911 K09422 gmx:778159 70.0922