Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00889 ATGGAAGGTGACGCCTTACATAACCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAACGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGCCAACTCAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGACCTGGGAAATCTTACTAATTTGGTGAGCTTGGATTTGTATCTAAACCGTTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTTAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGACTGGTCCTATTCCCATGTCATTGACTAATGTCACTTCTCTGCAAGTGCTGGATTTGTCTAACAACTGTCTCTCAGGTGTGGTTCCTGATAATGGATCCTTCTCATTATTCACTCCCATCAGCTTTACCAATAACTTGGATCTATGTGGCCCTGTCACTGGACACCCTTGTCCTGGGTCACCTCCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCAGTCTCAGCTCCAGGAGGAAATGGTGCCACTGGTGCAATAGCTGGAGGAGTGGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCAGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTACCTGCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACTGATACTTTTAGTAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCGCTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGTACTCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCATCGAAATCTCCTTCGTTTACGCGGGTTCTGTATGACACCAACTGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAACGTCCGGCACATCAACAACCCCTTGATTGGCCAACGAGAAAAAGAATAGCATTGGGATCATCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAAATTATCCATCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACAGCTGTTCGTGGCACAATTGGGCACATAGCCCCAGAGTACCTATCCACTGGTAAATCTTCAGAGAAAACTGATGTATTTGGGTATGGTATAATGCTTCTGGAACTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAGGAAAAGAAGCTAGAAATGCTTGTTGACCCTGATCTCCATGGCAATTACATAGATGCTGAGGTAGAACAGTTAATTCAGGTTGCACTGCTTTGCACACAAGGTTTCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGCATGCTTGAAGGTGATGGTTTAGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTGCGCCAGGAAGTGGAGCTCGCCCCTCATCCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGATAA 1797 0.4457 MEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLLKLRFLRLNNNSLTGPIPMSLTNVTSLQVLDLSNNCLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPVSAPGGNGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHGNYIDAEVEQLIQVALLCTQGFPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00889 598 Gene3D Ribonuclease Inhibitor 1 185 IPR032675 -
Lapu4g00889 598 Pfam Leucine Rich Repeat 139 156 IPR001611 GO:0005515
Lapu4g00889 598 FunFam Somatic embryogenesis receptor-like kinase 1 352 569 - -
Lapu4g00889 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Lapu4g00889 598 SUPERFAMILY L domain-like 4 166 - -
Lapu4g00889 598 Pfam Protein kinase domain 276 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00889 598 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Lapu4g00889 598 ProSiteProfiles Protein kinase domain profile. 275 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00889 598 Gene3D Phosphorylase Kinase; domain 1 244 351 - -
Lapu4g00889 598 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 560 - -
Lapu4g00889 598 Pfam Leucine rich repeat N-terminal domain 2 39 IPR013210 -
Lapu4g00889 598 SUPERFAMILY Protein kinase-like (PK-like) 254 550 IPR011009 -
Lapu4g00889 598 FunFam Somatic embryogenesis receptor kinase 1 244 351 - -
Lapu4g00889 598 SMART serkin_6 275 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00889 598 Gene3D Transferase(Phosphotransferase) domain 1 352 569 - -
Lapu4g00889 598 FunFam Somatic embryogenesis receptor kinase 1 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00889 Lapu-Chr4 23514942 23523250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00889 1 598 Receptor kinase-like Gene Family AT1G71830 90.635 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lapu4g00889 Pkinase 7.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00889 K13418 - gmx:100813918 1058.9