Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00871 ATGGAAGATTCAGAGGAGGAAGAGCTTCTAAATCTTACTCTTTCGGTTGCTGCAGGTAGGGAGAGGAAAAAGAAAGGAAGGACAAGGGATGATACTACTAATTCTCTTGTTATTCCTATGAAGTCCGTTGAAGGGTATGAAGGGAAGATCTTTAGGCTCCTCCAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATAAGAATAATGGCCTTCCTTTGATTCACTTGCTTCTTTCAACTGCCACTTCTATTGATGAAAGAAACTATTGTGCAACTCTAGAGAATCTCATAGAGTTGTACCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTATTTTGCTGATGGTTTGGCTGCAAGGCTTCTAACAAGAAAGTCCCCTTTCTATGACATGGTCATGGAGGAACCAACGACTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTCCATGTCATTGACTTTGATGTCTCCTCTGGTTTCCAATGGCCTTCTCTTATCCAATCACTTTCTGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACAATCTGAAAGAACTGCAAGAAACTGAAGCCAGATTAGTTAGCTTCTCAAAGGGGTTTAGTAACCACCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCATCAAGGCTCATCAACCTAAGGAAAAAGAAGAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAAGGTCTCGGACACATTGGGGCTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCTTGTCAAGATTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAGTATGAGAGGATGGAGACATGGAAAACAAGAATGGAGAGTCATGGGTTTGTGGGAAGAAAAATCAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTCCTGAAGATGAGGACCCATTATTATCCCCTACAGTTTGAAGAAGAGGGTGGAACTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4296 MEDSEEEELLNLTLSVAAGRERKKKGRTRDDTTNSLVIPMKSVEGYEGKIFRLLQMRELMLREDHRRKGVVEDKNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTTEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSSGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLINLRKKKNETLAVNLVSYLNTLSSFMKVSDTLGLVHSLSPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMESHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGTGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00871 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 456 IPR005202 -
Lapu4g00871 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Lapu4g00871 463 Pfam GRAS domain family 80 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00871 Lapu-Chr4 22679064 22680455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00871 66 461 GRAS Transcription Factor Family AT1G14920 33.252 1.49e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu4g00871 GRAS 2.1e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00871 - - gmx:100798251 778.859