Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00868 ATGGATACAAATGGGAGTCTGCGTTCCAACACCTGGGCAAGGTTGTCATCCTTAATCTCTCCTGCAAGTGGGTTAGTATCGGATACCCTGTCTTTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGATCCCTCAAATTCAGATTATGGGATCAGGGCAGAAGTACCTTTCAAAGAATTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCATTGCAACTCAAACAATGAAACTGATATCCCTAATCAAGAAAACTGTCATCTGAATGAATCATCACAAACCAGTGCACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCAATTGATTGTTCATCAAAAAGGCATTGGACAACCTAATGAACTTGTGACGCAGGAACAGCAGCTCATCACAACTGATCTTACATCAATCATTATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGCACAACCTTGCAAATGCTGGTACATTGTTTGGACAGATTGACCAGCTCCGTGGGACGACAGTTCCTTCTGGGACTGGTGGAAGTAGCAGCTGTATTCAGCCACAAAATAATGGTGAAAAAAAAATGTCTGATCAGTCCATGCAAACTGATCTACCTAATAGTTGTGAAATGGAGCCAAACTACAATATGGTAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGTCCCTGGTTCATATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCTCCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGACGCAAATCTCCGTATGCACATGCGTGGCCATGGCGATGAGTACAAAACCCCAGCAGCTCTTGCAAAACCGCATAAAGAATCTGGGTCACCGAAGCTTATCAAAAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCCTATGTGTCAAAAATCATTACAAAAGGACACATTGTGACAAGAGTTACACGTGCAGTAGATGCAACACCAAGAAGTTCTCTGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGTACAACATTTTCTAGGAAAGACAAGCTGTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACACTAAAGGGGTAGCTGAGCCACCGAATCATGACAGCAAAGGGAACAGTAAGGTGGAGAGTATGAACTTCACTTTTGGATCAAGTCCTTCAAATGGAAATGAAGTTGAAAATGTCATCAATGTAAAAGGCAATAGTGATGATCCTATCAGTTTTTTCTCATCATTGAACTTTGATAATAGCTTTGGTGGATTTAATGAATTCACTAGACCTCTATTTGATGACTCAGAAGGCTCATTCTCTTTTGTCATGCCTGGGTCTTTCAAATCTGGAGGAGAACCAAGTCCTGACAATCTTTTGTAA 1557 0.4181 MDTNGSLRSNTWARLSSLISPASGLVSDTLSFPGFGLQNNQPKWDDPSNSDYGIRAEVPFKEFNQPSQTQSPLHCNSNNETDIPNQENCHLNESSQTSALQDWDPNVMLNNLSFLEEKIHQLQDLVQLIVHQKGIGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANAGTLFGQIDQLRGTTVPSGTGGSSSCIQPQNNGEKKMSDQSMQTDLPNSCEMEPNYNMVEQELKDEEDVDDGENLVPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAEPPNHDSKGNSKVESMNFTFGSSPSNGNEVENVINVKGNSDDPISFFSSLNFDNSFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGEPSPDNLL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00868 518 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 85 493 IPR044300 GO:0010044|GO:0010447
Lapu4g00868 518 Gene3D Classic Zinc Finger 257 323 - -
Lapu4g00868 518 SUPERFAMILY beta-beta-alpha zinc fingers 271 298 IPR036236 -
Lapu4g00868 518 SMART c2h2final6 273 295 IPR013087 -
Lapu4g00868 518 SMART c2h2final6 321 354 IPR013087 -
Lapu4g00868 518 SMART c2h2final6 359 381 IPR013087 -
Lapu4g00868 518 MobiDBLite consensus disorder prediction 65 88 - -
Lapu4g00868 518 MobiDBLite consensus disorder prediction 192 221 - -
Lapu4g00868 518 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Lapu4g00868 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00868 Lapu-Chr4 22507472 22510472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00868 240 502 C2H2 Transcription Factor Family AT1G34370 71.429 1.08e-132 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu4g00868 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00868 - - gmx:100500526 921.383