Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00866 ATGTGCAGGTATGACTACCCTTCCAAATCTTTCCATAGTGTTGTTTTGTTCCTCTTTTCTTTCTGTCCCATGGTGTTGTCCCGGCTATCACAAACCCAAACAGAAACCATGAACAATCTCTCAACGAATCTTACTCATACTGTTCCATGGAATGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCCTACCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGTTTTTCACTCCTTTCATCTGACTTTCTGCTTCTTGTTTGCAAAATTGAATCTTTGGAACATCTTGATGTCTCCAACAACCATCTGAGCTCAATCCCGGATGGTTTCATCACTGAGTGTGGAAAGATTAAGGGGTTGAAGCTTTTGAATTTCAGTGGTAGCAAGTTAGGAGGTGTTTTACCTACTTTTCATGGCTTTGGTGCATTGGAATCCCTGGATATGTCTTTCAATGCGATGGGAGGGAATATTGGTTTAGAGATAGAGGGGCTGGTTAGCCTCAAAAGTTTGAATCTTTCTTTCAATAGATTCACTGGGTCTCTTCCTACCAAATTGGGAAAGTCCATGGTTTTGGAGCACCTCCTGCTTTCTAACAATAGCTTTCATGGCAAAATCCCTGAAGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATAAACTTTCACAGTCTATTCCTACCAATATCGGGAAGCTTTCTAAATTGGAAATTTTGATCCTTTCCACTAATAACCTCACTGGTGAAATTCCAACTTCACTTGTGAACATCACCAAACTTTCTAGATTTGCAGCAAGTGAGAACAGTTTCGCAGGTTCTATACCTTCTGGGATTACAAATTATCTCACGAGTTTGGATCTTAGTTATAATAATCTGGCTGGACCCATTCCAGACGACCTTTTATCTCCATCACAGTTACAGGTTGTAGATTTGACCAATAATATGTTGAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGCAATCATCTGAGTGGAAACATTCCTTCAGATGCTTTTGTACGAGTTCATAATTTGACATACTTGGAGCTGGATAACAATATCTTGACGGGATCGATACCAGATGAATTGGGTTCTTGCAGGAGTTTGACATTGTTGAATATAGCTCAGAATCGGTTGAGTGGTGTATTGCCACAGCAGCTTGGTAATCTTAGCAATCTTCATGTCTTGCAGCTCCAATTTAACAATCTTAATGGTACAATCCCAATTCAAATTGGCCAACTTCATAGGTTGATAACCCTGAATTTGAGCCGGAATTGTCTGGGTGGACCAATTCCATCTGAGATTACAGATTTAAGCAATCTTAATTTCCTGTACTTGCAAGGCAACAATCTTAGTGGTTCCATACCGACATCCATTGGCAACTTGAGATATCTTTTAGAACTCCAACTTGCGCAAAACCACCTGAGCGGTCTTATTCCAAGCATGCCAGTGAGTCTGCAGGTTTCATTGAATCTTAGTAGCAACCTCTTTAGTGGTCCTATTCCTAGCAGTTTTAGTAGTTTGATTAGCCTGGAAGTCTTGGATCTCTCAAATAACAACTTTTCTGGTAAAATTCCTGATGATCTTACTAAAATGCCGGCTTTGACACGGTTGTTACTTTCTAGCAATCTTCTTCTGTCTGGTGAAATCCCAAAATTCACACAAAATATTGAGGTTGAATATTCCGGAACTAATCTAAAAAAAGATACTGCACAAGACTACCCAATAGCCAACACGATCTCCAAGAATGGAATATCCGTTGTAGTAGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCCTTGTCACTCTGTTGGTTGCGTCAGTGTCACGCCACTATTACAGGGTTAATGACGAGCATTCACAGTCAAGAGAAGATCGTCAGCATCCTCAGGTCATGCAAAGTAATTTACTAACTCCTAATGGAATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTTCTGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTATATGGCTGTCATGCCGTCTGGTTCAATCTATTTTGTCAAGAAACTGAATTGGTCTGACAAGATATTCCCAGTTGGAAGTTATGATAAATTTGGTAAAGAGCTAGAAGTCTTGGCAAAATTGAACAATTCAAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGATACTGCTTGTATACTATACGAGTTTATCTCAAAAGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGGATTTGTCTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAGGGACTTTCTTTTCTTCATGGATTCACCTCTAATCCTATTCTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAGAGCACGGGGAACTTTTCTGCAGTTGCTGGTTCAGTAGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTGACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTGCTGACAGGAAAACCTGCAGTGACTGAAGGAACGGAATTGGTCAAGTGGGTTATGCGTAACTCCACAAACCAAGACTACATTCTTGACTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAGTTCTTGAGATTGCTCGTGTTTGTGTGAGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTAAGAATGCTCTTAAATGCTAGATGA 2844 0.403 MCRYDYPSKSFHSVVLFLFSFCPMVLSRLSQTQTETMNNLSTNLTHTVPWNGSDPCAWKGVSCDPTNSSVVGISLSGFSLLSSDFLLLVCKIESLEHLDVSNNHLSSIPDGFITECGKIKGLKLLNFSGSKLGGVLPTFHGFGALESLDMSFNAMGGNIGLEIEGLVSLKSLNLSFNRFTGSLPTKLGKSMVLEHLLLSNNSFHGKIPEELLSYENLTWIDLKNNKLSQSIPTNIGKLSKLEILILSTNNLTGEIPTSLVNITKLSRFAASENSFAGSIPSGITNYLTSLDLSYNNLAGPIPDDLLSPSQLQVVDLTNNMLNGSLPTKVSPNLFRLRFGSNHLSGNIPSDAFVRVHNLTYLELDNNILTGSIPDELGSCRSLTLLNIAQNRLSGVLPQQLGNLSNLHVLQLQFNNLNGTIPIQIGQLHRLITLNLSRNCLGGPIPSEITDLSNLNFLYLQGNNLSGSIPTSIGNLRYLLELQLAQNHLSGLIPSMPVSLQVSLNLSSNLFSGPIPSSFSSLISLEVLDLSNNNFSGKIPDDLTKMPALTRLLLSSNLLLSGEIPKFTQNIEVEYSGTNLKKDTAQDYPIANTISKNGISVVVAILIAIVAAIFLVGLVTLLVASVSRHYYRVNDEHSQSREDRQHPQVMQSNLLTPNGIHRSNIDFSKAMEAVSETSNVTLKTRFSTYYMAVMPSGSIYFVKKLNWSDKIFPVGSYDKFGKELEVLAKLNNSNVMTPLAYVLSTDTACILYEFISKGSLFDVLHGSMDLSLDWASRYSIAVGVAQGLSFLHGFTSNPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVMRNSTNQDYILDFNVSRTSQAVRNQMLAVLEIARVCVSTSPESRPKMKSVLRMLLNAR* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00866 947 ProSiteProfiles Protein kinase domain profile. 674 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00866 947 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 642 753 - -
Lapu4g00866 947 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Lapu4g00866 947 Gene3D Transferase(Phosphotransferase) domain 1 754 947 - -
Lapu4g00866 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 943 - -
Lapu4g00866 947 SMART LRR_typ_2 521 545 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 451 475 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 355 379 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 166 190 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 238 262 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 92 115 IPR003591 -
Lapu4g00866 947 SMART LRR_typ_2 403 427 IPR003591 -
Lapu4g00866 947 SUPERFAMILY RNI-like 254 568 - -
Lapu4g00866 947 SUPERFAMILY Protein kinase-like (PK-like) 685 943 IPR011009 -
Lapu4g00866 947 PRINTS Leucine-rich repeat signature 521 534 - -
Lapu4g00866 947 PRINTS Leucine-rich repeat signature 287 300 - -
Lapu4g00866 947 Gene3D Phosphorylase Kinase; domain 1 635 753 - -
Lapu4g00866 947 Pfam Protein kinase domain 685 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00866 947 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 186 279 - -
Lapu4g00866 947 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 754 947 - -
Lapu4g00866 947 Pfam Leucine rich repeat 404 464 IPR001611 GO:0005515
Lapu4g00866 947 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Lapu4g00866 947 Pfam Leucine rich repeat 331 392 IPR001611 GO:0005515
Lapu4g00866 947 Pfam Leucine rich repeat 502 558 IPR001611 GO:0005515
Lapu4g00866 947 SUPERFAMILY L domain-like 46 326 - -
Lapu4g00866 947 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 185 - -
Lapu4g00866 947 Gene3D Ribonuclease Inhibitor 188 283 IPR032675 -
Lapu4g00866 947 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Lapu4g00866 947 Gene3D Ribonuclease Inhibitor 284 585 IPR032675 -
Lapu4g00866 947 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00866 Lapu-Chr4 22416631 22420641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00866 145 947 Receptor kinase-like Gene Family AT2G41820 38.295 6.92e-143 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu4g00866 Pkinase 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00866 - - gmx:100796647 1379.39