Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00849 TTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAGCGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGATGCAGACAACATATCGAGATCTAGTAGCACTTACATTGGTAAAATGAGGTCCAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTACAACAATTCTCAGCTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTTCTAGGTACTAGGGGCCCACGCAGGATGAACTGCACCATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTGGCACTGTGCCCGGCCAACCAGAGCTCCTTCCCCGCTCTCTCGAAGATTCCTTTAGGAGCATATCCTTTGCTAGATCAATTTACAGCTCAACTGAGTTTAGCAGTTCTAGGTTCTCAGACATAGTTGTGGCAGGAAATGAAGAGGAGCAGGGAAAGGACATGCCTCTAGTTCTTAAAAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTGAACTTTAGGGGAAGAGTGACTGTTGCATCTGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCTCCTGCAGCCGGTGCTCCTCCACCGGCGTCGCAGCCAGCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 843 0.4603 LLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKMRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGGTVPGQPELLPRSLEDSFRSISFARSIYSSTEFSSSRFSDIVVAGNEEEQGKDMPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPPPASQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00849 280 Pfam Tub family 4 275 IPR000007 -
Lapu4g00849 280 ProSitePatterns Tub family signature 2. 265 280 IPR018066 -
Lapu4g00849 280 PANTHER TUBBY-RELATED 4 278 - -
Lapu4g00849 280 PRINTS Tubby superfamily signature 23 39 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 182 199 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 258 280 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 200 216 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 88 115 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 39 63 IPR000007 -
Lapu4g00849 280 PRINTS Tubby superfamily signature 237 256 IPR000007 -
Lapu4g00849 280 Gene3D Tubby Protein; Chain A 1 280 IPR025659 -
Lapu4g00849 280 SUPERFAMILY Tubby C-terminal domain-like 5 280 IPR025659 -
Lapu4g00849 280 MobiDBLite consensus disorder prediction 60 81 - -
Lapu4g00849 280 ProSitePatterns Tub family signature 1. 200 213 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00849 Lapu-Chr4 21693090 21697161 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00849 1 280 TUB Transcription Factor Family AT1G43640 70.447 2.47e-143 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu4g00849 Tub 2.2e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00849 K19600 - gmx:100799499 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00849 4 21693090 21697161 Lapu4g00849 4 21693090 21697161 ECH
Lapu4g00849 4 21693090 21697161 Lapu7g01953 7 35651859 35655910 PCT