Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00846 ATGTCCTTCCGCAGTATTGTTCGTGATGTGAGGGATGGGATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTAAGGCTTCCTGGTGGCAGCAAGTCGAATAGCTCGGTTCATGAGGTGCATGAACGCCCTCCTGTCATACAGAACAGCCTGTGGGCTAGCCTTCCACCCGAGCTGCTTCGTGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTGCTCGGAAGCATGTGGTTGCATGCGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTCCTTTGTCTGAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAGCGGACCAGAAGAACGACTTGCACAGAGTATATTATATCAATGGATGCAGACAACATATCGAGATCTAGTAGCACTTACATTGGTAAAATGAGGTCCAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTACAACAATTCTCAGCTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTTCTAGGTACTAGGGGCCCACGCAGGATGAACTGCACCATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTGGCACTGTGCCCGGCCAACCAGAGCTCCTTCCCGCTCTCTCGAAGATTCCTTTAGGAGCCAGGGAAAGGACATGCCTCTAG 885 0.478 MSFRSIVRDVRDGIGSLSRRSFDLRLPGGSKSNSSVHEVHERPPVIQNSLWASLPPELLRDVIRRLEESETTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKMRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPVSALEPGGTVPGQPELLPALSKIPLGARERTCL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00846 294 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Lapu4g00846 294 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Lapu4g00846 294 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Lapu4g00846 294 SUPERFAMILY F-box domain 44 95 IPR036047 GO:0005515
Lapu4g00846 294 SUPERFAMILY Tubby C-terminal domain-like 100 278 IPR025659 -
Lapu4g00846 294 Gene3D - 46 98 - -
Lapu4g00846 294 Pfam Tub family 112 276 IPR000007 -
Lapu4g00846 294 CDD F-box_AtTLP-like 51 95 - -
Lapu4g00846 294 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Lapu4g00846 294 Gene3D Tubby Protein; Chain A 110 283 IPR025659 -
Lapu4g00846 294 MobiDBLite consensus disorder prediction 204 226 - -
Lapu4g00846 294 FunFam Tubby-like F-box protein 46 99 - -
Lapu4g00846 294 PANTHER TUBBY-RELATED 46 278 - -
Lapu4g00846 294 Pfam F-box domain 51 97 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00846 Lapu-Chr4 21608098 21611662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00846 1 278 TUB Transcription Factor Family AT1G76900 75.261 4.71e-155 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lapu4g00846 Tub 1.1e-60 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00846 K19600 - gmx:100803729 524.628