Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00811 ATGGCAAAGATAAGGGAGAAGCTATACGTCACCGTTCCAAGTCTCTTTCGGTGCCCAATTTCAATGGACGTGATGCGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTTGACTCAGGACACGACACGTGTCCCGCCACCATGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTTCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCCGAACCTCCCTCGCCGGAATCCTCCGCCGACAACCTCCGCTCCCTCCTCCGTCAAATCCAAACCGCCGACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACAACCTCCGGCGAGAACCGTCGGAAACTCGCCTCCTTCCCCGGCTTCGACGCCTCTATTGTTCGCGCGATCGCCAGGTGTAGTTCGCGGATCGAAGCGTTGGAAAACGCGATCTACCTTCTCGACTCGGTTCTCCGAGAAAACGGAAATCCGGAGAAAATCCGAAGGCTAATTCTCGACGCTCGCCAACAATGCTTTGATTCTATGGTTTTCGTTTTGCGAAACGGATCTGTGAAATCGAAGATTGAAACGGTTAGGGTTTTGGAGTTTCTCGCTTGCGATTTTCAGTCCTCGAAATCGATCGCGGAAACGCAAGGACTTTTGTCGTTGGTAGCGGGTTTTTTGAAGGACAGCGGAGAGGAGTTACGCGACACCGTTTTGTTGTTTCTCGGCGTTGTTTCGGTGACTCACTCCGCAAAGGTGGACCTAGTTAATTGCGGTGTTGTCGAATTGGTTTCAAAATTGTTACGAGAGTGTTCGTCGGGGAAGACAGCGGAGAGGTGTCTGAGGGTGCTGGCGGTGGCAGCGACTTGCGCGGAGGGGAGGGCAGCGATGGCGGCGGAGCCTTCATGTGCAGCGGCGGTAGTGGAGAGAGTGACGAAGGCGGCAAAGGCCGCGGCAGAAGACGCGGTTGTGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAATGTTAAGGTGAGGGATGACGTGGCAAAGCGAAACGGCGTTGCAGTGATTTTATTGGTTATGCAGAGAGGATGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATCAAGGTTTTGAAGGGTGCGTGCAAGAACAAAGGTTTGGAGTTGGAACTAGGAAGCTATGATACCAAAACCACTCATATCAAACCTTGCTAG 1224 0.5449 MAKIREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSAEPPSPESSADNLRSLLRQIQTADDDLAGTLSKIAEFATTSGENRRKLASFPGFDASIVRAIARCSSRIEALENAIYLLDSVLRENGNPEKIRRLILDARQQCFDSMVFVLRNGSVKSKIETVRVLEFLACDFQSSKSIAETQGLLSLVAGFLKDSGEELRDTVLLFLGVVSVTHSAKVDLVNCGVVELVSKLLRECSSGKTAERCLRVLAVAATCAEGRAAMAAEPSCAAAVVERVTKAAKAAAEDAVVVLWSLCCLSGNVKVRDDVAKRNGVAVILLVMQRGWEEHVRSMCVDLIKVLKGACKNKGLELELGSYDTKTTHIKPC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00811 407 SUPERFAMILY ARM repeat 180 381 IPR016024 -
Lapu4g00811 407 PANTHER WDSAM1 PROTEIN 9 387 IPR045185 GO:0061630
Lapu4g00811 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Lapu4g00811 407 FunFam RING-type E3 ubiquitin transferase 4 83 - -
Lapu4g00811 407 SUPERFAMILY RING/U-box 8 81 - -
Lapu4g00811 407 CDD RING-Ubox_PUB 13 65 IPR045210 -
Lapu4g00811 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 81 IPR013083 -
Lapu4g00811 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Lapu4g00811 407 Gene3D - 82 391 IPR011989 -
Lapu4g00811 407 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00811 Lapu-Chr4 19760317 19767470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00811 6 406 U-box Gene Family AT5G09800 38.795 1.42e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00811 - - gmx:100786235 599.356