Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00808 ATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACATTGAACAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAACCTAAGTTTTGTCCATTTAGACTTTCCAGTGATGAATCATCTTTAATCTGGGTTACAAGTAGCGGAGAAAGAAATCTGAAGTTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCCGAGAAGGACTATCTGTCCTTTTCACTTATTTATGGTAACGGAAAGCGGTCTCTTGATTTGATTTGTAAAGATAAAGCAGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGGACTGATATCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGATGGAGTGACGGGGGTCTCATTCTTGATGATAACAGAGACTTGAAATCAAAAAGTCCAAGTGAAAGTTCTGCTAGCACTTCACGAGGCATCAGTTCTCCTGACATTTCTGTTAGTCTTCCAAATACTTCACCAACTTCCTTTCGGCCCGACAATATTATTTCTGAAAGGTCACATGCGCCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTCAGTGTTTCAAGTGCCCCAAGTACTTCGAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCTGTGATAATGTTAAAATTGGTGCCGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTACTTCTCCCTAGACCACTGGAAGCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATTTGGTTCAACCTCGTCTCGTTGAAGCATTGACTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCGTGTGCTGTTACAATGGCTGGGGAACTATACACATGGGGTGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGAAGTGCTGTCAGCCATTGGATACCAAAGAGAATTGCCGATCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACGGGGAAGCTGTTTACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGAGATAGAGAAAATGTTTCACATCCTAAAGAAGTGGAATCCTTGTCTGGACTGAGGACAATAGCTGTAGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACACTCCAGTACAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGCCTGCTCTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACCGCTGGCCTGACGACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGAAAGCTTCCATGCTTTGTTGGAGACAAGATTGCTGGGGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGAAAAACACCAGCTTTGATTGAAGCATTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAACAATCTCAGTGCTCAACTTGTAGACAGGCATTTGGCTTTACTAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCATTAAGAGCAGCATTGGCTCCTAATCCCGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTAGCAATAGTAATAGAAGGAATGCCTTGCCTCGTTTGTCAGGTGAAAACAAGGATAGGCTAGACAAATCTGACCTAAGATTATCCAAGGCAATAATTCCTTCTAACGTGGATTTGATAAAGCAACTAGATAATAAGGCAGCCAAGCAAGGAAAGAAAAGTGATACATTCTCACTGGTACGCCCCTCACAACCACCTTCTCTGCTACAGCTCAAAGATGTTGTCTTCTCCACTGCCCTTGATCTGAGACGAACAGTTCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCACCTTTCTCTAGAAGACCAAGTCCCCCTCGTTCAGCTACGCCAATTCCAACAACTTCAGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTTGAGGGCCTGAGACAGAGATGTGAACTGCAAGAAATAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGTCACTGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTTCCTCCTGGAGTTTATGATACCGAGAACATACGTCCAGCTTACCTACCAAATGGTCTTGAGACAAATGGCATCCACTATCCAGATTCAAATGGGGAGCGGCAGCACTCCAGAGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATGGGACTTGAATCCTCTCTACTGAATAGAACTCTGGGGAATTCACCAGGAACTAATGGAACTAATCTTCACCAGCAAATCCGGAGCCCCGTGACCTCTAATGGGACCAATAACCATCCAGATGTTAAATTGCCAAATGGTGGTGGTGTAATTCAGGCAGGCAGCGGTAGCACAGCTGATGGTAGGGATTCTGGGAATTTTCACAATGACGAGACTGGTTTGAAATCAAGGAATGCTGCACCGGCTGCTAATGCAAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTTAGTGATGGAACGAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCGGAGAACAGGGACAAAGTATATGAAAGATACAACGTTCGCAGTGCAGACAAGTCTGCCGGCCAAGCGGCACGAAGTTCAGAAGGGGCTCGTTCACCTCTTTCCCAAACTTAG 3354 0.4407 MADLASYGNANRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWVTSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYGNGKRSLDLICKDKAEAEVWIAGLKGLISSGQGGRSKIDGWSDGGLILDDNRDLKSKSPSESSASTSRGISSPDISVSLPNTSPTSFRPDNIISERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICDNVKIGADKNVNYFSPRADVLLPRPLEANVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNLVQPRLVEALTSTTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSAVSHWIPKRIADPLEGLQIAFVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSHPKEVESLSGLRTIAVACGVWHTAAVVEVIATHSSTSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCFVGDKIAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNALPRLSGENKDRLDKSDLRLSKAIIPSNVDLIKQLDNKAAKQGKKSDTFSLVRPSQPPSLLQLKDVVFSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLHAQVEGLRQRCELQEIELQRSAKKTQEAMSLAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDTENIRPAYLPNGLETNGIHYPDSNGERQHSRAESISGSSLASMGLESSLLNRTLGNSPGTNGTNLHQQIRSPVTSNGTNNHPDVKLPNGGGVIQAGSGSTADGRDSGNFHNDETGLKSRNAAPAANANQIEAEWIEQYEPGVYITLVALSDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSAGQAARSSEGARSPLSQT* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00808 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 626 688 IPR017455 -
Lapu4g00808 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Lapu4g00808 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 507 525 IPR000408 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 565 586 IPR000408 -
Lapu4g00808 1117 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Lapu4g00808 1117 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 466 517 IPR000408 -
Lapu4g00808 1117 SMART fyve_4 620 689 IPR000306 GO:0046872
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Lapu4g00808 1117 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Lapu4g00808 1117 Coils Coil 822 863 - -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 153 206 - -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 518 569 IPR000408 -
Lapu4g00808 1117 FunFam Putative E3 ubiquitin-protein ligase HERC1 628 696 - -
Lapu4g00808 1117 SUPERFAMILY RCC1/BLIP-II 234 623 IPR009091 -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 145 206 - -
Lapu4g00808 1117 FunFam PH, RCC1 and FYVE domains-containing protein 1 206 455 - -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 935 988 - -
Lapu4g00808 1117 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Lapu4g00808 1117 Gene3D - 359 453 IPR009091 -
Lapu4g00808 1117 Gene3D - 201 358 IPR009091 -
Lapu4g00808 1117 Gene3D - 454 633 IPR009091 -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 1094 1117 - -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 570 621 IPR000408 -
Lapu4g00808 1117 CDD PH_PLC_plant-like 12 124 - -
Lapu4g00808 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Lapu4g00808 1117 Pfam FYVE zinc finger 622 688 IPR000306 GO:0046872
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 920 1029 - -
Lapu4g00808 1117 Coils Coil 871 898 - -
Lapu4g00808 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 695 IPR013083 -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 1099 1117 - -
Lapu4g00808 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 295 IPR000408 -
Lapu4g00808 1117 Gene3D - 13 129 IPR011993 -
Lapu4g00808 1117 MobiDBLite consensus disorder prediction 782 815 - -
Lapu4g00808 1117 SUPERFAMILY PH domain-like 13 123 - -
Lapu4g00808 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 893 - -
Lapu4g00808 1117 SUPERFAMILY FYVE/PHD zinc finger 622 697 IPR011011 -
Lapu4g00808 1117 CDD FYVE_like_SF 631 684 - -
Lapu4g00808 1117 FunFam PH, RCC1 and FYVE domains-containing protein 1 456 627 - -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 348 399 IPR000408 -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 465 512 IPR000408 -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 571 618 IPR000408 -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 517 566 IPR000408 -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Lapu4g00808 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 403 451 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00808 Lapu-Chr4 19682360 19698661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00808 882 1108 Major Intrinsic Protein MIP AT1G31880 30.263 6.19e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00808 - - gmx:100805364 2004.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00808 4 19682360 19698661 Lapu7g01969 7 35919375 35927197 PCT