Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00790 ATGATGAAAGAATTTTGGAGCATGTTTTGTGCAGAATCTGATTGTCCTGGAACTGGAGGAATGCAACCTTTCTGTTTTGATTTGAAGCTTTTGAAGGATCCTTCTACATGCTTCAACCTGTTCTTGGTCATTTGCTTTGATGTATCACTGCTGGTCATACTGGCATTCATTTTGATCAAGAAGTATTTGTTCAGACCATTTCAGGGTATGTTTCAGGTGGAAAGATATTCAAACTTGCAGCTAATTTCTTCCATAACCAATGGATCTCTGGGGTTGTTGTATTTGTGCTTAGGAATTTGGATTTTTGAGGAGAACCTAAGGAAGAATCACACTATTCTTCCACTTAATTGGTGGTTGCTAGAACTTTTTGAAGGATTCAAATGGTTGTTAGTGTGCTCAAGTGTAAGTCTTAAGTTGAAACAACTTCCAAGATCATGGTTGTGGTTGTTTTCACTTATTACACTATTTGTTTCTGGTATTTTCTGTGTTTTATCCATGTCTTATGCAATTAGTAGCAAAGAACTGACCTTCAAAGAAACTTTAGATGTTTTATCTTTTCCAGGAGCAGTTTTACTACTTCTGTGCACTTATAAATCTTCTGAATGTGAAGACACTGCTACAAGAATTGATGAAGACCTTTATGACCCTTTAAACGGCCACTTCAATGAAGTTGGTCCTTATAACTACGTAACCCCATTTGCCAAAGCTGGATTCCTTAGTAGGATGTCATTTTGGTGGTTGAATCCACTGATGAAAATTGGTCAAGAGAAAACACTTCAGGATGAGGATATTCCAAAGTTGCCAGAATCGGATCGAGCAGAATTTTGCTATTTGTCGTTTTCAGAACAATTGAACAGGCAAAAAGGAAAAGAATCATTGCCACAATCATCAATTTTGTGGACAATAATTTTTTGCCACAAGAAAGATATTTTGATGTCCGGATTGTTTGCATTGCTGAAGGTACTCACTGTATGTACTGGTCCTGTACTTTTGAATGCTTTTATATTGATTGCTGAGGGTAGCGGCAGTTTCAAATATGAGGGTTATGTATTGGTCATATCACTTTTCATTATAAAGATCACAGAGTCCCTATCACAAAGGCAATGGTATTTTCGCACTAGGCTTGTTGGGATGAAAGTTAGGTCACTTCTTACAGCTTCCATATACAAAAAAATATTGAGGTTGTCTAGTGCAGCTAGATTGACTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTACAGAATTGGAGAATTCCCATTTTGGTTTCACCAGGCTTGGACAACAAGCCTCCAACTATGTATTGCGCTTGTAATACTTTTTCGTGCTATTGGCCTAGCAACAATTGCCTCATTGGTGGTGATATTTCTCACTGTGCTTTGCAATACTCCACTAGCAAAGATGCAGCATAAGTTTCAGAGTAAACTCATGGTGGCTCAAGATGAGAGATTGAAGGTCAGTTCTGAGGCCCTTGTGAATATGAAAGTGCTGAAGCTATATTCGTGGGAAACCCATTTTAAAAATGCTATTGAAAGATTGAGAAATACGGAACTAAAATTGTTAGGTGCAGTGCAATTGAGAAAGGCATACAACATCATTTTATTTTGGACCTCACCTGTTTTAGTGTCTGCTGCTTCTTTTGGGGCATGTTACTTTTTGAAGGTTCCTTTACATGCAAACAATGTTTTCACTTTTGTGGCAACATTACGCCTAGTGCAAGAACCAATTACAGCCATCCCAGATGTTGTTGCGGTATTCATTCAAGCAAAAGTTGCATTTGCCAGGATTGTTAATTTCCTTGAGGCACCTGAATTACAAAGTAAAAAATTCAGGAATAGGTGTTTTTATGATAGTAACAAAGGCCCAATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGCAATGTATCAAAGTCAACTCTGAGGAACATAAACTTGGAGATTAGACGTGGGCAGAAGTTGGCAATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAACAACAATTCTCGGTGAAGTTCCTGTGACAAAAGGAACTATAGAAGTTAATGGAAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGAACAATACGAGAAAATATTTTGTTTGGATCTGATTTGGATGCTCATAGATATCGAGAAACACTTCGTAGATCTTCACTACTGAAGGACCTGAAGTTGTTTCCTCATGGAGATCTCACTGAAATAGGTGAGAGAGGAGTTAACTTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATGTATATCTTTTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCCACAAATTTGTTTAACGAATACATCATGGATGGTCTTAAAGAGAAAACTGTTTTACTCGTAACTCATCAAGTTGACTTTCTACCAGCGTTCGATTCTGTTTTGTTGATGTCAAATGGGAAAATCCTAGAAGTTGCTCCTTATCATCATTTGTTGACTTCAAGCCGAGAATTTCAATATCTAGTTACTGCTCACAACGAAACTGCAGGTTCTGACAACCCTATGAATATTTCTTCTTCCCAGAGGCATTCAACTTCTGCCAGAGAGATTACACAAGCTTGCATGGAGCAGTTACAAGCAACAAATGAAAATCAGTTAATAAAGGAAGAAGAGAGAGAGATAGGAGACACAGGGTTGAAACCGTACTTGCAATATTTGAATGGGATGAAAGGCTATGTATACTTCTTTATGGCTTCTTTTTGTCACCTCATGTTTGTCATTTGCCAGATACTGCAAAACTCATGGATGGCTGCAAATGTTGACAATTCCCAAGTCAGCACATTGCGGTTGATTGTGGTTTACTTCTTGATTGGGGTCTCTTCTATAATTTTCTTGTTGACCAGAACTCTACTTGTAGTTGCCTTTGGTATTCAATCATCGACATATTTATTTGTGCAGTTAATGAACTCCCTTTTCCGTGCACCAATGTCCTTTTATGATTGTACACCATTGGGAAGGATACTTAGCAGGGTCTCATCAGATCTAACCATCATGGATCTTGATATACCTTTTATCCTAAGTTTCAGTGCGGTAGGTGCTATATACTTATCTTCGAATCTCACAGTTCTAGCTATTGTCTCTTGGCAAGTCTTGGTTCTCTCCTTACCAATGGTTTATGCTGCAATTCGCTTGCAGAGATATTATTTGTCCACTGCAAAAGAATTGATGCGCGTGAATGGCACAACAAAATCACTAGTAGCTAATCATATAGCTGAAACAACTACTGGAGCTGTGACAATAAGAGCTTTTGAGGAAGAAGATCGCTTTTTCGAGAAGAATCTTGATCTAATTGATATCAATGCTAGTCCCTTCTTTCATAGTTTTGCCTCGAATGAATGGCTGATCCAAAGATTAGAAATAATTAGTGCATTACTTCTTACCTCTGCAACTCTATGCATGGTTATGCTTCCACCAGGGACTTTCAGCTCTGGATTTGTTGGCATGGCTCTCTCTTATGGCTTTACCTTAAACGCTTCCTTAGTATTTTTAATTCAAAACCAATGCAGTCTAGAAAATTACATAATATCCGTAGAGAGGCTAAATCAATATATGCATATTCCAAGTGAGGCCCCAGAAGTAATAGAAAGAAATCGTCCTCCTTCAAATTGGCCAGTCACTGGTAAAGTAGAACTAAATGACTTGCAGATACGATACAGGCCCTTTGGACCCCTTATACTCCATGGAATCACATGCACATTCAAAGCAGGACACAAGATTGGAATCGTTGGAAGGACAGGCAGCGGGAAGTCCACTCTTATTAGTGCATTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTGTAGTTGATGGCATAGACATATCTTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGAGTTATACCTCAGGATCCTACCCTTTTTAATGGAACTGTTAGATATAATTTGGACCCTTTATCTCAATTCTCTGATCAAGAAATATGGGAGGTTCTTGGGAAGTGTCAGCTGCTAGAAGTTGTACAAGAGAAAGAAGAGGGACTAAACTCCTCGGTTGTCGAAGATGGATCAAACTGGAGCATCGGACAAAGGCAATTGTTTTGTTTGGGTCGTGCGCTGTTAAGGAAAAGTAGGATATTGGTGTTGGATGAAGCCACTGCATCAATTGACAATGCGACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGAATACCAACCGTGATGGATTGCAGTATGGTTCTTTCAATTAGTGATGGAAAATTGGTGGAGTATGATAAACCAGTGAACTTGATGATGAAAGAAGGATCGCTATTCATGCAGCTTGTGAAGGAATACTGGTCTCATTTTCATTCTGCAGATTCACATTGA 4443 0.3885 MMKEFWSMFCAESDCPGTGGMQPFCFDLKLLKDPSTCFNLFLVICFDVSLLVILAFILIKKYLFRPFQGMFQVERYSNLQLISSITNGSLGLLYLCLGIWIFEENLRKNHTILPLNWWLLELFEGFKWLLVCSSVSLKLKQLPRSWLWLFSLITLFVSGIFCVLSMSYAISSKELTFKETLDVLSFPGAVLLLLCTYKSSECEDTATRIDEDLYDPLNGHFNEVGPYNYVTPFAKAGFLSRMSFWWLNPLMKIGQEKTLQDEDIPKLPESDRAEFCYLSFSEQLNRQKGKESLPQSSILWTIIFCHKKDILMSGLFALLKVLTVCTGPVLLNAFILIAEGSGSFKYEGYVLVISLFIIKITESLSQRQWYFRTRLVGMKVRSLLTASIYKKILRLSSAARLTHSGGEIMNYVTVDAYRIGEFPFWFHQAWTTSLQLCIALVILFRAIGLATIASLVVIFLTVLCNTPLAKMQHKFQSKLMVAQDERLKVSSEALVNMKVLKLYSWETHFKNAIERLRNTELKLLGAVQLRKAYNIILFWTSPVLVSAASFGACYFLKVPLHANNVFTFVATLRLVQEPITAIPDVVAVFIQAKVAFARIVNFLEAPELQSKKFRNRCFYDSNKGPISIKSADFSWEGNVSKSTLRNINLEIRRGQKLAICGEVGSGKSTLLTTILGEVPVTKGTIEVNGKFAYVSQTAWIQTGTIRENILFGSDLDAHRYRETLRRSSLLKDLKLFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKEKTVLLVTHQVDFLPAFDSVLLMSNGKILEVAPYHHLLTSSREFQYLVTAHNETAGSDNPMNISSSQRHSTSAREITQACMEQLQATNENQLIKEEEREIGDTGLKPYLQYLNGMKGYVYFFMASFCHLMFVICQILQNSWMAANVDNSQVSTLRLIVVYFLIGVSSIIFLLTRTLLVVAFGIQSSTYLFVQLMNSLFRAPMSFYDCTPLGRILSRVSSDLTIMDLDIPFILSFSAVGAIYLSSNLTVLAIVSWQVLVLSLPMVYAAIRLQRYYLSTAKELMRVNGTTKSLVANHIAETTTGAVTIRAFEEEDRFFEKNLDLIDINASPFFHSFASNEWLIQRLEIISALLLTSATLCMVMLPPGTFSSGFVGMALSYGFTLNASLVFLIQNQCSLENYIISVERLNQYMHIPSEAPEVIERNRPPSNWPVTGKVELNDLQIRYRPFGPLILHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIVVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQFSDQEIWEVLGKCQLLEVVQEKEEGLNSSVVEDGSNWSIGQRQLFCLGRALLRKSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCSMVLSISDGKLVEYDKPVNLMMKEGSLFMQLVKEYWSHFHSADSH* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00790 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1234 1468 IPR003439 GO:0005524
Lapu4g00790 1480 SMART AAA_5 1260 1452 IPR003593 GO:0016887
Lapu4g00790 1480 SMART AAA_5 653 826 IPR003593 GO:0016887
Lapu4g00790 1480 CDD ABCC_MRP_domain1 626 826 - -
Lapu4g00790 1480 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Lapu4g00790 1480 CDD ABC_6TM_ABCC_D2 920 1209 IPR044726 GO:0140359
Lapu4g00790 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00790 1480 CDD ABC_6TM_ABCC_D1 313 599 IPR044746 GO:0140359
Lapu4g00790 1480 SUPERFAMILY ABC transporter transmembrane region 915 1214 IPR036640 GO:0005524|GO:0016020
Lapu4g00790 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1467 IPR027417 -
Lapu4g00790 1480 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 849 IPR003439 GO:0005524
Lapu4g00790 1480 FunFam ABC transporter C family member 10 294 607 - -
Lapu4g00790 1480 Pfam ABC transporter transmembrane region 311 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00790 1480 Pfam ABC transporter transmembrane region 918 1170 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00790 1480 SUPERFAMILY ABC transporter transmembrane region 299 604 IPR036640 GO:0005524|GO:0016020
Lapu4g00790 1480 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Lapu4g00790 1480 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 233 1468 - -
Lapu4g00790 1480 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00790 1480 FunFam ABC transporter C family member 5 615 856 - -
Lapu4g00790 1480 FunFam ABC transporter C family member 5 883 1215 - -
Lapu4g00790 1480 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
Lapu4g00790 1480 Gene3D ABC transporter type 1, transmembrane domain 881 1215 IPR036640 GO:0005524|GO:0016020
Lapu4g00790 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 848 IPR027417 -
Lapu4g00790 1480 Gene3D - 603 873 IPR027417 -
Lapu4g00790 1480 FunFam ABC transporter C family member 3 1217 1469 - -
Lapu4g00790 1480 Gene3D - 1217 1469 IPR027417 -
Lapu4g00790 1480 CDD ABCC_MRP_domain2 1232 1452 - -
Lapu4g00790 1480 Gene3D ABC transporter type 1, transmembrane domain 298 602 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00790 Lapu-Chr4 18929168 18935360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00790 620 873 Calmodulin-binding Proteins AT2G36910 29.368 5.74e-25 111