Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00785 ATGGAAGATTTCTGGAGCATGTTTTGTGGGCATTCTGTTCGTTCAAAGACTGTGGAAAAGCTTTCGTGTTACGATTTCGAGTTTTTGAAAGATCCCTCCTTATGCATCAACCATTTAATGATAATTTCCTTTGATGCGTTACTCTTGATCATGTTGTCTTTCGCTATGACCCACAAGTCTTTCTCGAGACCATGTCAGCGTCTAATCCAAGTGGAAAGATATTCAAACTTGCAACTATGTTCTGCCATAACCAGTGCTTCTCTTGGGTTGTTGCATTTGTGTTTAGGCATTTGGGCTTTGGAGGAAAAGTTAAGGAAAAACCATACTACTTTTCCCCTTGACTGCTGGTTAGTATGGTTATGGTTGTTCTCTATATTGACATTATTTGTTTATGGTATTTTCTGTGTTTTATCCCTGTCTTACTCAATTAGCAGCAGAGAACTATCCTTCAAGGTCGCTTTTGATGTTCTATCTTTTCCTGGAGCCTTTTTACTACTTTTATGCACATATAGAGTATGTAAACTTGAAGACACTAACAGAGAAACTAGAGAAGGCCTTTATGCCCCTTTAAGAGACCAGTTCAATGGAGTTGATCCTAATAGGTATGTAACCCCATTTGCAAAAGCTGGATTCTGTAGTAGGATGTTGTTTTGGTGGTTGAATCCTCTTATGAAAAAGGGTCAAGAGAAAACTCTTGAGGATGATGATATCCCAAAGTTGGGAGAGTTAGATCGAGCAGAAAGTTGTTATCTATCGTTTGAAGAACATTTGAACAAACAGATAGAAAAAGATCCATCGTCACGTGTGTCAATTTTGTGGATAATAATTTTGTGCCATCAAAAGGAGATTTTGATATCAGGATTCTTTGCATTGCTTAAGGTACTGACTGTGTCTTCTGGTCCTGTACTTCTAAATGCCTTTATACTGGTTGCTGAGGGTAATGAAAGTTTTAAGTATGAGGGCCATGTATTGATCATATCACTTTTCCTTATAAAGGTCATAGAGTCCCTTTCACAAAGGCAGTGGTACTTCCGCAGTAGACTTGTTGGGATGAAAGTTAGATCACTGCTTACTGCAGCCATTTATAAAAAATTGTTGAGATTGTCCAATGTTGCAAGATTGACACACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAGTTTCCCTTTTGGTTTCACCAAACATGGACTACTAGTGTCCAACTATGTATTGCTTTAGTAATACTTTTTCTTCTAAAACTGTATGCATGGGAAAACCATTTTAAAAATGCTATAGAAAAGTTAAGAAAAGTGGAACTCAAATTGTTAGCTGCGGTGCAACTAAGAAAGGCATACAACATATTTATCTTTTGGTCTTCACCTGTTTTGGTTTCTGCTGCTTCCTTTGGGGCATGTTACTTCCTTAAAGTTCCTTTGCATGCAAATAATGTTTTCACATTTGTGGCAGCTCTACGGATAGTGCAAGAGCCAATTACAGCCATCCCTGATGTTATCGGGGTGGTCATTCAAGCCAAGGTTGCATTCGCACGAATTGTTAGGTTCCTTGAGGCACAAGAACAACAAAGTAAAAGTTTTATGAAAGAGAGCTTTGCTAACGATCTTAATGACTCAATTTTAATCAAACATGCTGATTTTTCATGGGAAGATAATGTATCAAAGCCAACATTGAGGAACATAAATTTGGAGATTAAACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGCAAATCAACCCTCTTATCATTGATTCTTGGAGAAGTTCCTATTACAAAAGGAACTATAGAAGTTTATGGGAAGTTTGCTTATGTTTCTCAAACAGCATGGATACAAACAGGTACTGTAAGGGAAAATATTTTGTTCGGATCTGAATTAGATGCCGAAAGATATCAAGAAACACTTCATAGATCTTCACTACTGAAGGACCTGGAGTTGTTTCCCAATGGTGACCTAACAGAAATAGGTGAGAGAGGAGTTAACCTAAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCTCTTTATCAGAATGCTGATATATATCTTCTGGATGATCCATTCAGTGCTGTTGATGCCTATACTGCGACAAATTTGTTTAATGATTACATCATGGAAGGACTTAAAGAGAAAACGGTATTAGTAGTAACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTATGTTAATTTCAAAGGGGGAAATCCTTGAAGTTGCTTCTTATCATCCTCTATTGAGCTCAAGCAAAGAATTCCAGAACTTTGTCAATGCTCACAAGGAGACTGCTGGTTCTAACAAGCTTGTGAATGTTACTTTTCCCAAGAGACATCCAACTTCTGTTGGAGAGATTAACCAAGCTTTCATTAAGAACAAATTCAATGTAGCACAAAGAAATAAATTAATACAGCAAGAAGAGAGAGAGATAGGAGACACTGGGTTGAAGCCTTACTTACAATATCTGAATCAAATGAAATGCTATATATTCTTCTCTGTGGCTGCACTTTGTCACCTTACATTTGCAAGTTTCCAAATATTGCAAAACTCATGGATGGCTAAAAATGTTGATAATGATCGTGTCAGCACGTTGCGGTTGATTGTAGTTTACTTCTTGATTGGAGTTATTTCAATACTTTTCCTGTTGATTAGAAGTCTAATTCTTGTTTCTTTGGGGTTTCTATCATCAAAGTATCTTTTTTTACAATTAATGAATTCACTTTTTCGTGCACCGATGTCATTTTATGACTCCACACCATTAGGAAGGATAATTAGTAGGGTCTCATCAGATCTAAGCATTGTGGATCTTGATATTCCATTTAGCCTCACCTTTGTTGTGGGAGCAACAATAAATACTTATTCAACTCTTACAGTTTTAGCAGTTCTCACATGGCCAGTCTTGGTTATCTCAGTACCACTAGTTTATATTGCAATTCGCTTGCAGAGATATTACTTTGCCTCTGCTAAAGAAGTAATGCGCATGAATGGCACAACAAAATCCTCTGTAGCTAATCATATTGCTGAAACTGTAGCTGGAGTTGTGACTATAAGGGCTTTTGAGGAGGAATATCGTTATTTTGTAAAGAACCTTGATTTGATTGACATCAATGCTAGTTCTTTCTTCCATAGTTTTTCCTCAAATGAGTGGTTGATACAACGTTTAGAAATGGTAGCTGCAGTTGTTCTTACCTTCTCAGCACTTTGCATGGTCTTGTTTCCACCTGGGACTTTTACATCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTACCCTAAACTTTCATGAGGCTGGAGAAGTAATAGAAACAAAAGGCCCTCCTTTTAATTGGCCAGATGAAGGTGAAATAGAAATAAATGACTTGCAGGTACGATACAGGCCTGATGGACCACTTATACTCAAGGGAATCACCTGCACATTCAAAGCAGGACACAAGGTTGGAATTGTTGGCAAGACAGGCAGTGGAAAGTCCACTCTTATTGGTTCTTTATTTCGTCTTGTGGAGCCAGCAGGTGGAAAAATTATTGTGGATGGCATAGACATATCTTCAATTGGCCTTCATGATTTGAGGTCACGTTTTGGTGTTATACCTCAGGATCCTACACTTTTTAATGGAACTGTTAGATACAATTTGGACCCTTTGTCTCAACACTCTGATAAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGCTGCGAGAAGTTGTCCAAGAGAAAGAACAAAGCTTAAACTCCTCTGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAGCTATTTTGTTTGGGGCGTGCTATATTGAGAAGTAGTAAGATATTGGTGCTGGATGAAGCTACAGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACTATTAGGACTGAATTTGCTGATTGTACAGTGATAACAGTAGCACACAGAATACCAACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGTAGAATATGATGAACCAAATACCTTGATGAAGAGAGAAGGGTCGTTGTTCAGACAACTTGTCCAAGAATATTGGTCTCATTTTCAGTCTTCAGAACCCCAT 4113 0.3817 MEDFWSMFCGHSVRSKTVEKLSCYDFEFLKDPSLCINHLMIISFDALLLIMLSFAMTHKSFSRPCQRLIQVERYSNLQLCSAITSASLGLLHLCLGIWALEEKLRKNHTTFPLDCWLVWLWLFSILTLFVYGIFCVLSLSYSISSRELSFKVAFDVLSFPGAFLLLLCTYRVCKLEDTNRETREGLYAPLRDQFNGVDPNRYVTPFAKAGFCSRMLFWWLNPLMKKGQEKTLEDDDIPKLGELDRAESCYLSFEEHLNKQIEKDPSSRVSILWIIILCHQKEILISGFFALLKVLTVSSGPVLLNAFILVAEGNESFKYEGHVLIISLFLIKVIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKLLRLSNVARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSVQLCIALVILFLLKLYAWENHFKNAIEKLRKVELKLLAAVQLRKAYNIFIFWSSPVLVSAASFGACYFLKVPLHANNVFTFVAALRIVQEPITAIPDVIGVVIQAKVAFARIVRFLEAQEQQSKSFMKESFANDLNDSILIKHADFSWEDNVSKPTLRNINLEIKHGQKVAICGEVGSGKSTLLSLILGEVPITKGTIEVYGKFAYVSQTAWIQTGTVRENILFGSELDAERYQETLHRSSLLKDLELFPNGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAYTATNLFNDYIMEGLKEKTVLVVTHQVDFLPAFDSVMLISKGEILEVASYHPLLSSSKEFQNFVNAHKETAGSNKLVNVTFPKRHPTSVGEINQAFIKNKFNVAQRNKLIQQEEREIGDTGLKPYLQYLNQMKCYIFFSVAALCHLTFASFQILQNSWMAKNVDNDRVSTLRLIVVYFLIGVISILFLLIRSLILVSLGFLSSKYLFLQLMNSLFRAPMSFYDSTPLGRIISRVSSDLSIVDLDIPFSLTFVVGATINTYSTLTVLAVLTWPVLVISVPLVYIAIRLQRYYFASAKEVMRMNGTTKSSVANHIAETVAGVVTIRAFEEEYRYFVKNLDLIDINASSFFHSFSSNEWLIQRLEMVAAVVLTFSALCMVLFPPGTFTSGFIGMALSYGLTLNFHEAGEVIETKGPPFNWPDEGEIEINDLQVRYRPDGPLILKGITCTFKAGHKVGIVGKTGSGKSTLIGSLFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPLSQHSDKEIWEVLGKCQLREVVQEKEQSLNSSVVEDGSNWSMGQRQLFCLGRAILRSSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLSISDGKLVEYDEPNTLMKREGSLFRQLVQEYWSHFQSSEPH 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00785 1371 Pfam ABC transporter 1142 1290 IPR003439 GO:0005524
Lapu4g00785 1371 Gene3D ABC transporter type 1, transmembrane domain 802 1104 IPR036640 GO:0005524|GO:0016020
Lapu4g00785 1371 Gene3D ABC transporter type 1, transmembrane domain 252 418 IPR036640 GO:0005524|GO:0016020
Lapu4g00785 1371 FunFam ABC transporter C family member 3 1108 1360 - -
Lapu4g00785 1371 FunFam ABC transporter C family member 5 533 776 - -
Lapu4g00785 1371 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 419 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00785 1371 SUPERFAMILY ABC transporter transmembrane region 826 1102 IPR036640 GO:0005524|GO:0016020
Lapu4g00785 1371 Gene3D ABC transporter type 1, transmembrane domain 419 530 IPR036640 GO:0005524|GO:0016020
Lapu4g00785 1371 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 842 1101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00785 1371 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 547 768 IPR003439 GO:0005524
Lapu4g00785 1371 SMART AAA_5 1151 1343 IPR003593 GO:0016887
Lapu4g00785 1371 SMART AAA_5 572 745 IPR003593 GO:0016887
Lapu4g00785 1371 ProSitePatterns ABC transporters family signature. 670 684 IPR017871 GO:0005524|GO:0016887
Lapu4g00785 1371 Pfam ABC transporter 563 697 IPR003439 GO:0005524
Lapu4g00785 1371 Gene3D - 1109 1361 IPR027417 -
Lapu4g00785 1371 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 417 - -
Lapu4g00785 1371 SUPERFAMILY ABC transporter transmembrane region 272 523 IPR036640 GO:0005524|GO:0016020
Lapu4g00785 1371 CDD ABC_6TM_ABCC_D1 285 518 IPR044746 GO:0140359
Lapu4g00785 1371 Gene3D - 540 774 IPR027417 -
Lapu4g00785 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 768 IPR027417 -
Lapu4g00785 1371 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1125 1359 IPR003439 GO:0005524
Lapu4g00785 1371 CDD ABCC_MRP_domain2 1123 1343 - -
Lapu4g00785 1371 FunFam ABC transporter C family member 5 803 1111 - -
Lapu4g00785 1371 CDD ABCC_MRP_domain1 545 745 - -
Lapu4g00785 1371 Pfam ABC transporter transmembrane region 284 418 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00785 1371 Pfam ABC transporter transmembrane region 838 1096 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g00785 1371 CDD ABC_6TM_ABCC_D2 840 1102 IPR044726 GO:0140359
Lapu4g00785 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1115 1358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00785 Lapu-Chr4 18730792 18737005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00785 539 756 Calmodulin-binding Proteins AT2G36910 31.624 4.08e-24 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00785 4 18730792 18737005 Lapu7g01971 7 35958501 35984025 PCT