Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00781 ATGGTCAAGGAAAACCCTCGGGATGAGGTTGTGAGCGTAACCGGGGCCAACGGTTTCATTGGTTCGTGGCTGGTTCGAACCCTCTGGGAGAATCAACACCATAGCTGCACCATCCACGCTACCGTCTTCCCCGGCTCCGACGTCTCTCATCTCTTCACCCTCCACCCCACCGCTATCTCCTGTATCACCGTCTTCCCCGCCAACCTCCTTGACGCTGCCGCTATTTTTCGCGCCATCGCCAGATGCTCCGGCGTCTTCCACGTGGCGTCTCCCTGCACGCTGGAGGACCCCGTGGATCCTCAAAGTGAGCTACTAACCTGTGACGTCTCCGGCTCCGACGTCTCCCTGCACGCTGAACATGATCGAAGCCGCGAGCTTGCAAGGTGCCCAATGGAACAACATTGTCCCAGTGTGATGACTGCCTTCCAGTACTGTAAGTTGGGGATCCACCAGGTGGCTGCCTCAAGGGCACCACAATCTCGTCCATTTCCAGGTCCCATAGAAGGAAGTGTGTATCCTAATCACCCAATGTTCTAG 537 0.5698 MVKENPRDEVVSVTGANGFIGSWLVRTLWENQHHSCTIHATVFPGSDVSHLFTLHPTAISCITVFPANLLDAAAIFRAIARCSGVFHVASPCTLEDPVDPQSELLTCDVSGSDVSLHAEHDRSRELARCPMEQHCPSVMTAFQYCKLGIHQVAASRAPQSRPFPGPIEGSVYPNHPMF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00781 178 Pfam NAD dependent epimerase/dehydratase family 12 113 IPR001509 -
Lapu4g00781 178 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 111 IPR036291 -
Lapu4g00781 178 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 112 - -
Lapu4g00781 178 Gene3D - 6 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00781 Lapu-Chr4 18673179 18678430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00781 9 118 Monolignol Biosynthesis Gene Families AT2G02400 56.364 2.35e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00781 - - vra:106775739 182.57