Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00777 ATGGCTTTTCCCAACTCCCGAAACTTGTTTTTGGCTTTTATGGTTTTCTTTCTAATTTCAAACCTTACTTTCGCAAAGCAATCAAAGATAAATGGTTTGAAAATGAATGTAATTGATCGATGTTGGAGACTGAATCCTGAATGGAGTAGACATCGATCTCAATTAGCCACATGTTCTGTGGGCTATGCTGGCAAGATGATAAACAACATGGGTAATGACCTTATTCATTATAAAGTTACAGACTCTGATGATGATCCTATAAATCCCAAACCCAACACCTTGAGATATGGAACTTCTATTATTCAAGGAAAAGTGTGGATCACATTCCAAAAGGACATGCTCATTACACTAAAGAAACCTCTTCTCGTTAGTAGTTTTACCACCATCGATGGTCGAGGTGCTAATGTGCACATCGCTAATAATGCATGTTTGATGATTTTTAAGGCTACCAACATAATCATTCATGGCATTCGAGTTCATCATTGTAAACCTCAAGCCCCTGGGATCGTAATGGGACCTAAAGGAAAGGTGATTTCTTTAGGTCATGTAGATGGAGATGCAATAAGATTGGTTACAGCTTCAAAGATTTGGATTGACCATAATACACTTTTTGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCCACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACCAAAACATGAAGGTTACCGTAGTGTACAATCATTTTGGACCTAATTGTAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTATCTAGGATGGCTTCAATATGCTATTGGTGGAAGCATGGAACCTAGTCTTAAAAGTGAAGCTAACCTCTTTGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAGAGTAGTGATAAAAATGAAGATAGATGGGATTTTCATTCGATAAGGGACAATTTTGAAAATGGAGCTTCCTTTGCTGGAACAAAAGGAGTAAATGTGCAAAAACCAAACTATAGCAAGGAACAAAATTTTAAAGTTGTTGATGCCAAATTTGTGAGATCATTAACAAGTTCATCAGGCGTGTTACGGATACAATAA 1146 0.3735 MAFPNSRNLFLAFMVFFLISNLTFAKQSKINGLKMNVIDRCWRLNPEWSRHRSQLATCSVGYAGKMINNMGNDLIHYKVTDSDDDPINPKPNTLRYGTSIIQGKVWITFQKDMLITLKKPLLVSSFTTIDGRGANVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPKGKVISLGHVDGDAIRLVTASKIWIDHNTLFDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKNEDRWDFHSIRDNFENGASFAGTKGVNVQKPNYSKEQNFKVVDAKFVRSLTSSSGVLRIQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00777 381 Gene3D - 35 379 IPR012334 -
Lapu4g00777 381 SMART amb_all 112 309 IPR002022 -
Lapu4g00777 381 Pfam Pectate lyase 121 303 IPR002022 -
Lapu4g00777 381 PANTHER PECTATE LYASE 18-RELATED 33 379 IPR045032 GO:0030570
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Lapu4g00777 381 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Lapu4g00777 381 SUPERFAMILY Pectin lyase-like 30 377 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00777 Lapu-Chr4 18635933 18637453 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00777 66 313 Polysaccharide Lyase AT5G09280 69.758 2.47e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00777 K01728 - gmx:100780437 642.884