Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00775 ATGAATGTAATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGACACCGATCTCAATTGGCCACATGTTCCGTTGGGTATGCTGGCAAGATGATAAACAACATCGATAATGACCTTATTCACTATATTGTTACTGACTCTAGTGATGATCCTGTAAATCCCAAACCCAACACCTTGAGGTATGGAACTTCTATTGTTCAAGGAAAAGTGTGGATCACATTCCAAAAAGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCTGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTCTGTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCACAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAGTGTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCAGTCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTGATAAAAATAGAGATAAATGGGATTTTCAATCAGTGAGGGACATTTTTGAAAATGGAGCTTCTTTTGATGTAACAAAAGGAGGAGATGTGCAAAAACCAAATTATACCAAGGAACAAAATTTCAAAGTTATTGATGCCAAATTTGTGAGATCGTTGACACGTTCATCGGGTGTGCTACGAATGTTATAA 1044 0.3927 MNVIDRCWRLNPEWRRHRSQLATCSVGYAGKMINNIDNDLIHYIVTDSSDDPVNPKPNTLRYGTSIVQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVISVGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKNRDKWDFQSVRDIFENGASFDVTKGGDVQKPNYTKEQNFKVIDAKFVRSLTRSSGVLRML* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00775 347 SMART amb_all 78 275 IPR002022 -
Lapu4g00775 347 Pfam Pectate lyase 89 269 IPR002022 -
Lapu4g00775 347 SUPERFAMILY Pectin lyase-like 2 318 IPR011050 -
Lapu4g00775 347 Gene3D - 1 345 IPR012334 -
Lapu4g00775 347 PANTHER PECTATE LYASE 18-RELATED 1 345 IPR045032 GO:0030570
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Lapu4g00775 347 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00775 Lapu-Chr4 18567980 18569470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00775 32 279 Polysaccharide Lyase AT5G09280 70.161 1.10e-139 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00775 K01728 - gmx:100780437 628.246