Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00774 ATGATCCTCGTAAATCCCAAACCCAACACCTTGAGGTACGGAACTTCTATTGTTCAAGGAAAAGTGTGGATCACATTCCAAAAAGACATGCTCATTACACTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAATGTCCATATTGCTAATAATGCTTGTTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCCCCTGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTTCTGTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCACAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAGTGTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCAGTCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAAGTAGTGATAAAAATAAAGATAGATGGGATTTTCAATCGGTGA 744 0.4005 MILVNPKPNTLRYGTSIVQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVISVGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKVVIKIKIDGIFNR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00774 247 PANTHER PECTATE LYASE 18-RELATED 4 234 IPR045032 GO:0030570
Lapu4g00774 247 SMART amb_all 29 226 IPR002022 -
Lapu4g00774 247 Pfam Pectate lyase 40 220 IPR002022 -
Lapu4g00774 247 Gene3D - 3 247 IPR012334 -
Lapu4g00774 247 SUPERFAMILY Pectin lyase-like 4 224 IPR011050 -
Lapu4g00774 247 PRINTS Pollen allergen Amb family signature 37 53 IPR018082 -
Lapu4g00774 247 PRINTS Pollen allergen Amb family signature 203 222 IPR018082 -
Lapu4g00774 247 PRINTS Pollen allergen Amb family signature 181 200 IPR018082 -
Lapu4g00774 247 PRINTS Pollen allergen Amb family signature 101 122 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00774 Lapu-Chr4 18562435 18563507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00774 4 243 Polysaccharide Lyase AT5G09280 69.167 3.45e-134 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00774 K01728 - gmx:100780437 445.662