Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00773 ATGGGGCTCGAAGGAAAGGTGATTTCTGTAGGTCATGTAGACGGGGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCACAATACACTTTATGATTGTCAAGATGGTTTACTCGATGTAACACGAGGTTCTACCGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATATGAGAGACCAAAACATGAAAGTTACCGTAGTGTACAATCACTTTGGACCTAATTGTAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCCAGTCTCAAAAGTGAAGCTAACCTCTTCGTAGCACCAACAATAGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTGATAAAAATAAAGATAGATGGGATTTTCAGTCGGTGAGGGACATTTTTGAAAATGGAGCTTCCTTTGACGTAACAAAAGGAGGAGAGGTGCAAAAACCAAATTATACCAAGGAACAAAATTTCAAAGTTGTTGATGCCAAATTTGTGAGATTGTTGACACGTTCATCTGGTGTGCTACGGATGTTATAA 636 0.3931 MGLEGKVISVGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKSSDKNKDRWDFQSVRDIFENGASFDVTKGGEVQKPNYTKEQNFKVVDAKFVRLLTRSSGVLRML* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00773 211 PRINTS Pollen allergen Amb family signature 116 135 IPR018082 -
Lapu4g00773 211 PRINTS Pollen allergen Amb family signature 156 180 IPR018082 -
Lapu4g00773 211 PRINTS Pollen allergen Amb family signature 187 210 IPR018082 -
Lapu4g00773 211 PRINTS Pollen allergen Amb family signature 14 35 IPR018082 -
Lapu4g00773 211 PRINTS Pollen allergen Amb family signature 94 113 IPR018082 -
Lapu4g00773 211 Gene3D - 5 209 IPR012334 -
Lapu4g00773 211 Pfam Pectate lyase 10 133 IPR002022 -
Lapu4g00773 211 SUPERFAMILY Pectin lyase-like 12 171 IPR011050 -
Lapu4g00773 211 PANTHER PECTATE LYASE 18-RELATED 7 209 IPR045032 GO:0030570
Lapu4g00773 211 SMART amb_all 2 139 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00773 Lapu-Chr4 18556400 18557885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00773 1 143 Polysaccharide Lyase AT5G09280 79.021 4.42e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00773 K01728 - gmx:100780437 374.015